As of 17-Oct-2018 number of released structures: 9817
Structural Features
Base Pair Hydrogen Bonding Classification
Nucleic Acid Backbone Torsions
Biological Assembly 1
RNA View
NDB ID: 5XF6 PDB ID: 5XF6 
Title:
NUCLEOSOME CORE PARTICLE WITH AN ADDUCT OF A BINUCLEAR RAPTA (RU-ARENE-PHOSPHAADAMANTANE) COMPOUND HAVING AN ETHYLENEDIAMINE LINKER
Molecular Description:
Histone H3.2
Histone H4
Histone H2A
Histone H2B 1.1/DNA Complex
Structural Keywords:
B DOUBLE HELIX
Nucleic Acid Sequence:
Click to show/hide 2 nucleic acid sequences
Protein Sequence:
Click to show/hide 4 protein sequences
Primary Citation:
Davey, G.E., Adhireksan, Z., Ma, Z., Riedel, T., Sharma, D., Padavattan, S., Rhodes, D., Ludwig, A., Sandin, S., Murray, B.S., Dyson, P.J., Davey, C.A.
Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, pp. 1575 - 1575, 2017.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P 21 21 21
Cell Constants:
a = 106.84 b = 109.729 c = 182.527 (Ångstroms)
α = 90.0 β = 90.0 γ = 90.0 (degrees)
Refinement:
The structure was refined using the REFMAC program. The R value is 0.2105 for 57584 reflections in the resolution range 47.15 to 2.63 Ångstroms with Fobs > 0.0 sigma(Fobs) and with I > 0.0 sigma(I)
Download Data:
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format) 1
Structure Factors (cif format)
Coordinates (pdb format, Unix compressed(.gz))
Coordinates (cif format, Unix compressed(.gz))
NMR Restraints (cif format, Unix compressed(.gz))
XML | Complete with coordinates (xml format, GNU compressed(.gz))