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NDB ID: 6AR1  PDB ID: 6AR1 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
6AR1|1|C|A|136AR1|1|C|A|130BPh
6AR1|1|C|A|136AR1|1|C|G|12s53
6AR1|1|C|A|136AR1|1|C|G|14s35
6AR1|1|C|C|86AR1|1|C|C|80BPh
6AR1|1|C|C|86AR1|1|C|C|9s35
6AR1|1|C|C|86AR1|1|C|G|7s53
6AR1|1|C|C|96AR1|1|C|C|8s53
6AR1|1|C|C|96AR1|1|C|C|90BPh
6AR1|1|C|C|96AR1|1|C|U|10s35
6AR1|1|C|G|116AR1|1|C|G|110BPh
6AR1|1|C|G|116AR1|1|C|G|12s35
6AR1|1|C|G|116AR1|1|C|U|10s53
6AR1|1|C|G|126AR1|1|C|A|13s35
6AR1|1|C|G|126AR1|1|C|G|11s53
6AR1|1|C|G|126AR1|1|C|G|120BPh
6AR1|1|C|G|146AR1|1|C|A|13s53
6AR1|1|C|G|46AR1|1|C|G|40BPh
6AR1|1|C|G|46AR1|1|C|U|3s53
6AR1|1|C|G|46AR1|1|C|U|5s35
6AR1|1|C|G|76AR1|1|C|C|8s35
6AR1|1|C|G|76AR1|1|C|G|70BPh
6AR1|1|C|G|76AR1|1|C|U|6s53
6AR1|1|C|U|16AR1|1|C|U|1n0BP
6AR1|1|C|U|16AR1|1|C|U|2s33
6AR1|1|C|U|106AR1|1|C|C|9s53
6AR1|1|C|U|106AR1|1|C|G|11s35
6AR1|1|C|U|106AR1|1|C|U|100BPh
6AR1|1|C|U|26AR1|1|C|U|1s33
6AR1|1|C|U|26AR1|1|C|U|2n0BP
6AR1|1|C|U|26AR1|1|C|U|3
6AR1|1|C|U|36AR1|1|C|G|4s35
6AR1|1|C|U|36AR1|1|C|U|2
6AR1|1|C|U|36AR1|1|C|U|30BPh
6AR1|1|C|U|56AR1|1|C|G|4s53
6AR1|1|C|U|56AR1|1|C|U|50BPh
6AR1|1|C|U|56AR1|1|C|U|6s35
6AR1|1|C|U|66AR1|1|C|G|7s35
6AR1|1|C|U|66AR1|1|C|U|5s53
6AR1|1|C|U|66AR1|1|C|U|60BPh
6AR1|1|F|A|136AR1|1|F|A|130BPh
6AR1|1|F|A|136AR1|1|F|G|12s53
6AR1|1|F|A|136AR1|1|F|G|14s35
6AR1|1|F|C|86AR1|1|F|C|80BPh
6AR1|1|F|C|86AR1|1|F|C|9s35
6AR1|1|F|C|86AR1|1|F|G|7s53
6AR1|1|F|C|96AR1|1|F|C|8s53
6AR1|1|F|C|96AR1|1|F|C|90BPh
6AR1|1|F|C|96AR1|1|F|U|10s35
6AR1|1|F|G|116AR1|1|F|G|110BPh
6AR1|1|F|G|116AR1|1|F|G|12s35
6AR1|1|F|G|116AR1|1|F|U|10s53
6AR1|1|F|G|126AR1|1|F|A|13s35
6AR1|1|F|G|126AR1|1|F|G|11s53
6AR1|1|F|G|126AR1|1|F|G|120BPh
6AR1|1|F|G|146AR1|1|F|A|13s53
6AR1|1|F|G|46AR1|1|F|G|40BPh
6AR1|1|F|G|46AR1|1|F|U|3s53
6AR1|1|F|G|46AR1|1|F|U|5s35
6AR1|1|F|G|76AR1|1|F|C|8s35
6AR1|1|F|G|76AR1|1|F|G|70BPh
6AR1|1|F|G|76AR1|1|F|U|6s53
6AR1|1|F|U|16AR1|1|F|U|1n0BP
6AR1|1|F|U|16AR1|1|F|U|2s33
6AR1|1|F|U|106AR1|1|F|C|9s53
6AR1|1|F|U|106AR1|1|F|G|11s35
6AR1|1|F|U|106AR1|1|F|U|100BPh
6AR1|1|F|U|26AR1|1|F|U|1s33
6AR1|1|F|U|26AR1|1|F|U|2n0BP
6AR1|1|F|U|26AR1|1|F|U|3
6AR1|1|F|U|36AR1|1|F|G|4s35
6AR1|1|F|U|36AR1|1|F|U|2
6AR1|1|F|U|36AR1|1|F|U|30BPh
6AR1|1|F|U|56AR1|1|F|G|4s53
6AR1|1|F|U|56AR1|1|F|U|50BPh
6AR1|1|F|U|56AR1|1|F|U|6s35
6AR1|1|F|U|66AR1|1|F|G|7s35
6AR1|1|F|U|66AR1|1|F|U|5s53
6AR1|1|F|U|66AR1|1|F|U|60BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (22)Relative Frequency
0BPh221.000
Base-StackingCount (12)Relative Frequency
s3320.167
s53100.833

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)