A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
Search for released structures

NDB ID: 6AQX  PDB ID: 6AQX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DC101:DG212_B-0.105-0.3520.0862.9073.3736.153
13A_DC103:DG210_B-0.189-0.0880.2584.0110.662.034
15A_DC105:DG208_B-0.348-0.3950.1510.6325.6681.752
12A_DG102:DC211_B0.38-0.330.0094.593-1.0680.214
14A_DG104:DC209_B0.061-0.3370.4780.1211.246.802
16A_DG106:DC207_B0.334-0.3150.3213.0492.0275.658
17C_DC301:DG412_D-0.102-0.3580.0812.4792.5746.011
19C_DC303:DG410_D-0.179-0.0820.2734.3011.0691.972
111C_DC305:DG408_D-0.349-0.3890.1450.4685.0781.704
18C_DG302:DC411_D0.392-0.3430.0494.637-1.1850.387
110C_DG304:DC409_D0.065-0.3310.386-0.8791.3376.766
112C_DG306:DC407_D0.332-0.3140.2872.8992.0435.715
113E_DC501:DG612_F-0.6920.240.56-9.386.76-7.3
115E_DC503:DG610_F-0.187-0.5150.537-7.231-0.27311.253
117E_DC505:DG608_F0.078-0.042-0.0617.4760.749-1.728
114E_DG502:DC611_F-0.2270.7340.509-5.7716.755-17.446
116E_DG504:DC609_F0.319-0.226-0.232-19.5432.2873.431
118E_DG506:DC607_F0.5840.1840.948-0.81-2.157-12.741
119G_DC701:DG812_H-0.6070.2470.617-8.4817.651-6.879
121G_DC703:DG810_H-0.189-0.5280.545-7.634-0.80111.487
123G_DC705:DG808_H0.073-0.071-0.0977.447-0.154-0.958
120G_DG702:DC811_H-0.210.6780.554-6.12416.103-16.348
122G_DG704:DC809_H0.366-0.228-0.323-20.9592.5133.118
124G_DG706:DC807_H0.5430.1430.915-0.867-1.98-11.881

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.