A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 6AQV  PDB ID: 6AQV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DC101:DG212_B-0.4990.0640.0342.190.222-1.4
13A_DC103:DG210_B-0.246-0.2420.1212.7831.3784.84
15A_DC105:DG208_B-0.4980.0-0.0363.1770.513-3.263
12A_DG102:DC211_B0.246-0.2260.058-3.2082.9763.965
14A_DG104:DC209_B0.388-0.0730.008-4.4180.217-1.932
16A_DG106:DC207_B0.22-0.318-0.007-4.1390.9873.761
17C_DC301:DG412_D-0.341-0.1030.2920.6190.8632.543
19C_DC303:DG410_D-0.33-0.150.1583.8565.96-0.479
111C_DC305:DG408_D-0.292-0.374-0.072-0.066-0.2555.174
18C_DG302:DC411_D0.295-0.1650.115-4.7712.1392.748
110C_DG304:DC409_D0.364-0.110.025-4.4290.769-2.37
112C_DG306:DC407_D0.249-0.2050.2341.241-0.5193.875
113E_DC501:DG612_F-0.14-0.2740.1952.6294.994.104
115E_DC503:DG610_F-0.269-0.055-0.2028.487-0.78-1.888
117E_DC505:DG608_F-0.213-0.1870.299-0.6492.5023.8
114E_DG502:DC611_F0.159-0.1820.163-2.6422.3021.828
116E_DG504:DC609_F-0.04-0.3570.353-4.0112.6773.599
118E_DG506:DC607_F0.056-0.3090.5330.389-2.3937.261

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.