A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
Search for released structures

NDB ID: 6AQT  PDB ID: 6AQT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_DC101:DG212_B-0.041-0.0790.0643.607-0.716-0.181
13A_DC103:DG210_B-0.179-0.1370.0233.845-0.29-0.394
15A_DC105:DG208_B-0.442-0.180.1174.407-0.0990.497
12A_DG102:DC211_B0.329-0.074-0.056-3.2942.1850.173
14A_DG104:DC209_B0.258-0.1110.085-1.991-1.7490.891
16A_DG106:DC207_B0.449-0.0580.083-1.7943.142-1.792
17C_DC301:DG412_D-0.137-0.1730.0983.451-0.4451.463
19C_DC303:DG410_D-0.476-0.0650.0110.6092.26-2.335
111C_DC305:DG408_D-0.268-0.2080.1423.8180.2013.685
18C_DG302:DC411_D0.275-0.141-0.018-4.9081.9781.103
110C_DG304:DC409_D0.352-0.2-0.001-1.5133.5112.085
112C_DG306:DC407_D0.478-0.2340.01-1.285-1.7333.52
113E_DC501:DG612_F-0.134-0.2340.0486.332-1.883.334
115E_DC503:DG610_F-0.505-0.1080.172-4.7671.982-0.512
117E_DC505:DG608_F-0.343-0.2290.1714.1331.5452.959
114E_DG502:DC611_F0.206-0.1570.011-5.1375.1272.273
116E_DG504:DC609_F0.327-0.16-0.065-2.58-1.3032.273
118E_DG506:DC607_F0.269-0.3070.08-3.333.2424.931

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.