A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Sep-2017 number of released structures: 9117
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NDB ID: 6ALS  PDB ID: 6ALS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_5CM3:DG22_B0.317-0.04-0.1136.407-10.3261.811
18A_5CM9:8OG16_B0.467-0.1080.207-14.578-8.5010.563
13A_8OG4:5CM21_B-0.456-0.1070.19112.989-8.5530.796
14A_DA5:DT20_B0.113-0.011-0.0799.924-17.4880.441
15A_DA6:DT19_B0.154-0.032-0.2495.446-25.424-2.834
110A_DC11:DG14_B0.295-0.10.0020.023-0.031-2.52
11A_DG2:DC23_B-0.297-0.0980.0210.187-0.414-2.235
19A_DG10:5CM15_B-0.324-0.044-0.124-7.021-10.111.728
16A_DT7:DA18_B-0.158-0.029-0.25-4.596-26.042-3.503
17A_DT8:DA17_B-0.104-0.014-0.09-10.589-18.979-0.117

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.