A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5W6V  PDB ID: 5W6V 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5W6V|1|R|A|25W6V|1|R|A|20BPh
5W6V|1|R|A|25W6V|1|R|U|3s35
5W6V|1|R|A|205W6V|1|R|A|200BPh
5W6V|1|R|A|45W6V|1|R|A|40BPh
5W6V|1|R|A|45W6V|1|R|U|3s53
5W6V|1|R|A|45W6V|1|R|U|5s35
5W6V|1|R|A|75W6V|1|R|A|70BPh
5W6V|1|R|A|75W6V|1|R|A|8s35
5W6V|1|R|A|85W6V|1|R|A|7s53
5W6V|1|R|A|85W6V|1|R|A|80BPh
5W6V|1|R|A|85W6V|1|R|A|9s35
5W6V|1|R|A|95W6V|1|R|A|8s53
5W6V|1|R|A|95W6V|1|R|A|90BPh
5W6V|1|R|U|35W6V|1|R|A|2s53
5W6V|1|R|U|35W6V|1|R|A|4s35
5W6V|1|R|U|35W6V|1|R|U|30BPh
5W6V|1|R|U|55W6V|1|R|A|4s53
5W6V|1|R|U|55W6V|1|R|U|50BPh
5W6V|1|R|U|55W6V|1|R|U|6s35
5W6V|1|R|U|65W6V|1|R|U|5s53
5W6V|1|R|U|65W6V|1|R|U|60BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (9)Relative Frequency
0BPh91.000
Base-StackingCount (1)Relative Frequency
s5311.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)