A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VI5  PDB ID: 5VI5 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5VI5|1|Q|A|45VI5|1|Q|A|40BPh
5VI5|1|Q|A|45VI5|1|Q|G|3s53
5VI5|1|Q|C|25VI5|1|Q|C|20BPh
5VI5|1|Q|C|25VI5|1|Q|G|3ns35
5VI5|1|Q|C|25VI5|1|Q|U|1s53
5VI5|1|Q|G|35VI5|1|Q|A|4s35
5VI5|1|Q|G|35VI5|1|Q|C|2ns53
5VI5|1|Q|G|35VI5|1|Q|G|30BPh
5VI5|1|Q|U|15VI5|1|Q|C|2s35
5VI5|1|Q|U|15VI5|1|Q|U|1n0BP


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)