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As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5V2R  PDB ID: 5V2R 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5V2R|1|A|A|115V2R|1|A|A|110BPh
5V2R|1|A|A|115V2R|1|A|U|12s35
5V2R|1|A|A|115V2R|1|B|A|20s55
5V2R|1|A|A|115V2R|1|B|G|19tHS
5V2R|1|A|A|155V2R|1|A|A|150BPh
5V2R|1|A|A|155V2R|1|A|G|14s53
5V2R|1|A|A|155V2R|1|B|C|16ns55n2BP
5V2R|1|A|A|35V2R|1|A|A|30BPh
5V2R|1|A|A|35V2R|1|A|C|2s53
5V2R|1|A|A|35V2R|1|A|G|4s35
5V2R|1|A|A|35V2R|1|B|G|28s55
5V2R|1|A|A|35V2R|1|B|U|27cWW
5V2R|1|A|A|55V2R|1|A|A|50BPh
5V2R|1|A|A|55V2R|1|A|A|6s35
5V2R|1|A|A|55V2R|1|A|G|4
5V2R|1|A|A|55V2R|1|B|A|26s55
5V2R|1|A|A|55V2R|1|B|G|25tHS
5V2R|1|A|A|65V2R|1|A|A|5s53
5V2R|1|A|A|65V2R|1|A|A|60BPh
5V2R|1|A|A|65V2R|1|A|A|7s35
5V2R|1|A|A|65V2R|1|B|G|24tHS
5V2R|1|A|A|75V2R|1|A|A|6s53
5V2R|1|A|A|75V2R|1|A|A|70BPh
5V2R|1|A|A|75V2R|1|A|C|8s35
5V2R|1|A|A|75V2R|1|B|C|23
5V2R|1|A|C|15V2R|1|A|C|10BPh
5V2R|1|A|C|15V2R|1|A|C|2s35
5V2R|1|A|C|15V2R|1|B|A|30s55
5V2R|1|A|C|15V2R|1|B|G|29cWW
5V2R|1|A|C|25V2R|1|A|A|3s35
5V2R|1|A|C|25V2R|1|A|C|1s53
5V2R|1|A|C|25V2R|1|A|C|20BPh
5V2R|1|A|C|25V2R|1|B|G|28cWW
5V2R|1|A|C|25V2R|1|B|G|29s55
5V2R|1|A|C|85V2R|1|A|A|7s539BPh
5V2R|1|A|C|85V2R|1|A|C|80BPh
5V2R|1|A|C|85V2R|1|A|G|9s35
5V2R|1|A|C|85V2R|1|B|A|22cWW
5V2R|1|A|G|105V2R|1|A|G|100BPh
5V2R|1|A|G|105V2R|1|A|G|9s53
5V2R|1|A|G|105V2R|1|B|A|20tSH3BPh
5V2R|1|A|G|105V2R|1|B|G|19s33
5V2R|1|A|G|135V2R|1|A|G|130BPh
5V2R|1|A|G|135V2R|1|A|G|14s35
5V2R|1|A|G|135V2R|1|A|U|12s53
5V2R|1|A|G|135V2R|1|B|A|18s55
5V2R|1|A|G|135V2R|1|B|C|17cWW
5V2R|1|A|G|145V2R|1|A|A|15s35
5V2R|1|A|G|145V2R|1|A|G|13s53
5V2R|1|A|G|145V2R|1|A|G|140BPh
5V2R|1|A|G|145V2R|1|B|C|16cWW
5V2R|1|A|G|145V2R|1|B|C|17s55
5V2R|1|A|G|45V2R|1|A|A|3s53
5V2R|1|A|G|45V2R|1|A|G|40BPh
5V2R|1|A|G|45V2R|1|B|A|26tSH
5V2R|1|A|G|45V2R|1|B|G|25s33
5V2R|1|A|G|45V2R|1|B|U|27s55
5V2R|1|A|G|95V2R|1|A|C|8s53
5V2R|1|A|G|95V2R|1|A|G|10s35
5V2R|1|A|G|95V2R|1|A|G|90BPh
5V2R|1|A|G|95V2R|1|B|A|21tSH3BPh
5V2R|1|A|G|95V2R|1|B|A|22s55
5V2R|1|A|U|125V2R|1|A|A|11s539BPh
5V2R|1|A|U|125V2R|1|A|G|13s35
5V2R|1|A|U|125V2R|1|A|U|120BPh
5V2R|1|A|U|125V2R|1|B|A|18cWW
5V2R|1|A|U|125V2R|1|B|G|19s55
5V2R|1|B|A|185V2R|1|A|G|13s55
5V2R|1|B|A|185V2R|1|A|U|12cWW
5V2R|1|B|A|185V2R|1|B|A|180BPh
5V2R|1|B|A|185V2R|1|B|C|17s53
5V2R|1|B|A|185V2R|1|B|G|19s35
5V2R|1|B|A|205V2R|1|A|A|11s55
5V2R|1|B|A|205V2R|1|A|G|10tHS
5V2R|1|B|A|205V2R|1|B|A|200BPh
5V2R|1|B|A|205V2R|1|B|A|21s35
5V2R|1|B|A|205V2R|1|B|G|19
5V2R|1|B|A|215V2R|1|A|G|9tHS
5V2R|1|B|A|215V2R|1|B|A|20s53
5V2R|1|B|A|215V2R|1|B|A|210BPh
5V2R|1|B|A|215V2R|1|B|A|22s35
5V2R|1|B|A|225V2R|1|A|C|8cWW
5V2R|1|B|A|225V2R|1|A|G|9s55
5V2R|1|B|A|225V2R|1|B|A|21s53
5V2R|1|B|A|225V2R|1|B|A|22n0BP
5V2R|1|B|A|225V2R|1|B|C|23s35
5V2R|1|B|A|265V2R|1|A|A|5s55
5V2R|1|B|A|265V2R|1|A|G|4tHS
5V2R|1|B|A|265V2R|1|B|A|26n0BP
5V2R|1|B|A|265V2R|1|B|G|25
5V2R|1|B|A|265V2R|1|B|U|27s35
5V2R|1|B|A|305V2R|1|A|C|1s55n2BP
5V2R|1|B|A|305V2R|1|B|A|300BPh
5V2R|1|B|A|305V2R|1|B|G|29s53
5V2R|1|B|C|165V2R|1|A|A|15ns55
5V2R|1|B|C|165V2R|1|A|G|14cWW
5V2R|1|B|C|165V2R|1|B|C|160BPh
5V2R|1|B|C|165V2R|1|B|C|17s35
5V2R|1|B|C|175V2R|1|A|G|13cWW
5V2R|1|B|C|175V2R|1|A|G|14s55
5V2R|1|B|C|175V2R|1|B|A|18s35
5V2R|1|B|C|175V2R|1|B|C|16s53
5V2R|1|B|C|175V2R|1|B|C|170BPh
5V2R|1|B|C|235V2R|1|A|A|7
5V2R|1|B|C|235V2R|1|B|A|22s53n9BP
5V2R|1|B|C|235V2R|1|B|C|230BPh
5V2R|1|B|C|235V2R|1|B|G|24s35
5V2R|1|B|G|195V2R|1|A|A|11tSH
5V2R|1|B|G|195V2R|1|A|G|10s33
5V2R|1|B|G|195V2R|1|A|U|12s55
5V2R|1|B|G|195V2R|1|B|A|18s53
5V2R|1|B|G|195V2R|1|B|G|190BPh
5V2R|1|B|G|245V2R|1|A|A|55BPh
5V2R|1|B|G|245V2R|1|A|A|6tSH
5V2R|1|B|G|245V2R|1|B|C|23s53
5V2R|1|B|G|245V2R|1|B|G|240BPh
5V2R|1|B|G|255V2R|1|A|A|5tSH3BPh
5V2R|1|B|G|255V2R|1|A|G|4s33
5V2R|1|B|G|255V2R|1|B|G|25n0BP
5V2R|1|B|G|285V2R|1|A|A|3s55
5V2R|1|B|G|285V2R|1|A|C|2cWW
5V2R|1|B|G|285V2R|1|B|G|280BPh
5V2R|1|B|G|285V2R|1|B|G|29s35
5V2R|1|B|G|285V2R|1|B|U|27s53
5V2R|1|B|G|295V2R|1|A|C|1cWW
5V2R|1|B|G|295V2R|1|A|C|2s55
5V2R|1|B|G|295V2R|1|B|A|30s35
5V2R|1|B|G|295V2R|1|B|G|28s53
5V2R|1|B|G|295V2R|1|B|G|290BPh
5V2R|1|B|U|275V2R|1|A|A|3cWW
5V2R|1|B|U|275V2R|1|A|G|4s55
5V2R|1|B|U|275V2R|1|B|A|26s53
5V2R|1|B|U|275V2R|1|B|G|28s35
5V2R|1|B|U|275V2R|1|B|U|270BPh


Base-PairsCount (13)Relative Frequency
cWW70.538
tHS60.462
Base-PhosphateCount (33)Relative Frequency
3BPh30.091
5BPh10.030
9BPh20.061
0BPh270.818
Base-StackingCount (19)Relative Frequency
s3320.105
s5370.368
s55100.526

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)