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As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5UEF  PDB ID: 5UEF 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5UEF|1|A|A|105UEF|1|A|A|100BPh
5UEF|1|A|A|105UEF|1|A|A|9s53
5UEF|1|A|A|105UEF|1|A|G|11s35
5UEF|1|A|A|105UEF|1|B|U|7cWW
5UEF|1|A|A|105UEF|1|B|U|8s55
5UEF|1|A|A|55UEF|1|A|A|50BPh
5UEF|1|A|A|55UEF|1|A|C|6s35
5UEF|1|A|A|55UEF|1|A|G|4s53
5UEF|1|A|A|55UEF|1|B|C|13ns55
5UEF|1|A|A|55UEF|1|B|U|12cWW
5UEF|1|A|A|95UEF|1|A|A|10s35
5UEF|1|A|A|95UEF|1|A|A|90BPh
5UEF|1|A|A|95UEF|1|A|U|8s53
5UEF|1|A|A|95UEF|1|B|A|9s55
5UEF|1|A|A|95UEF|1|B|U|8cWW
5UEF|1|A|C|135UEF|1|A|C|130BPh
5UEF|1|A|C|135UEF|1|A|G|14s35
5UEF|1|A|C|135UEF|1|A|U|12s53
5UEF|1|A|C|135UEF|1|B|A|5ns55
5UEF|1|A|C|135UEF|1|B|G|4cWW
5UEF|1|A|C|65UEF|1|A|A|5s53
5UEF|1|A|C|65UEF|1|A|C|60BPh
5UEF|1|A|C|65UEF|1|A|U|7s35
5UEF|1|A|C|65UEF|1|B|G|11cWW
5UEF|1|A|G|115UEF|1|A|A|10s53
5UEF|1|A|G|115UEF|1|A|G|110BPh
5UEF|1|A|G|115UEF|1|A|U|12s35
5UEF|1|A|G|115UEF|1|B|C|6cWW
5UEF|1|A|G|115UEF|1|B|U|7s55
5UEF|1|A|G|145UEF|1|A|C|13s53
5UEF|1|A|G|145UEF|1|A|G|140BPh
5UEF|1|A|G|145UEF|1|B|G|4s55
5UEF|1|A|G|145UEF|1|C|G|1s35
5UEF|1|A|G|45UEF|1|A|A|5s35
5UEF|1|A|G|45UEF|1|A|G|40BPh
5UEF|1|A|G|45UEF|1|B|C|13cWW
5UEF|1|A|G|45UEF|1|B|G|14s55
5UEF|1|A|U|125UEF|1|A|C|13s35
5UEF|1|A|U|125UEF|1|A|G|11s53
5UEF|1|A|U|125UEF|1|A|U|120BPh
5UEF|1|A|U|125UEF|1|B|A|5cWW
5UEF|1|A|U|75UEF|1|A|C|6s53
5UEF|1|A|U|75UEF|1|A|U|70BPh
5UEF|1|A|U|75UEF|1|A|U|8s35
5UEF|1|A|U|75UEF|1|B|A|10cWW
5UEF|1|A|U|75UEF|1|B|G|11s55
5UEF|1|A|U|85UEF|1|A|A|9s35
5UEF|1|A|U|85UEF|1|A|U|7s53
5UEF|1|A|U|85UEF|1|A|U|80BPh
5UEF|1|A|U|85UEF|1|B|A|10s55
5UEF|1|A|U|85UEF|1|B|A|9cWW
5UEF|1|B|A|105UEF|1|A|U|7cWW
5UEF|1|B|A|105UEF|1|A|U|8s55
5UEF|1|B|A|105UEF|1|B|A|100BPh
5UEF|1|B|A|105UEF|1|B|A|9s53
5UEF|1|B|A|105UEF|1|B|G|11s35
5UEF|1|B|A|55UEF|1|A|C|13ns55
5UEF|1|B|A|55UEF|1|A|U|12cWW
5UEF|1|B|A|55UEF|1|B|A|50BPh
5UEF|1|B|A|55UEF|1|B|C|6s35
5UEF|1|B|A|55UEF|1|B|G|4s53
5UEF|1|B|A|95UEF|1|A|A|9s55
5UEF|1|B|A|95UEF|1|A|U|8cWW
5UEF|1|B|A|95UEF|1|B|A|10s35
5UEF|1|B|A|95UEF|1|B|A|90BPh
5UEF|1|B|A|95UEF|1|B|U|8s53
5UEF|1|B|C|135UEF|1|A|A|5ns55
5UEF|1|B|C|135UEF|1|A|G|4cWW
5UEF|1|B|C|135UEF|1|B|C|130BPh
5UEF|1|B|C|135UEF|1|B|G|14s35
5UEF|1|B|C|135UEF|1|B|U|12s53
5UEF|1|B|C|65UEF|1|A|G|11cWW
5UEF|1|B|C|65UEF|1|B|A|5s53
5UEF|1|B|C|65UEF|1|B|C|60BPh
5UEF|1|B|C|65UEF|1|B|U|7s35
5UEF|1|B|G|115UEF|1|A|C|6cWW
5UEF|1|B|G|115UEF|1|A|U|7s55
5UEF|1|B|G|115UEF|1|B|A|10s53
5UEF|1|B|G|115UEF|1|B|G|110BPh
5UEF|1|B|G|115UEF|1|B|U|12s35
5UEF|1|B|G|145UEF|1|A|G|4s55
5UEF|1|B|G|145UEF|1|B|C|13s53
5UEF|1|B|G|145UEF|1|B|G|140BPh
5UEF|1|B|G|145UEF|1|D|G|1s35
5UEF|1|B|G|45UEF|1|A|C|13cWW
5UEF|1|B|G|45UEF|1|A|G|14s55
5UEF|1|B|G|45UEF|1|B|A|5s35
5UEF|1|B|G|45UEF|1|B|G|40BPh
5UEF|1|B|U|125UEF|1|A|A|5cWW
5UEF|1|B|U|125UEF|1|B|C|13s35
5UEF|1|B|U|125UEF|1|B|G|11s53
5UEF|1|B|U|125UEF|1|B|U|120BPh
5UEF|1|B|U|75UEF|1|A|A|10cWW
5UEF|1|B|U|75UEF|1|A|G|11s55
5UEF|1|B|U|75UEF|1|B|C|6s53
5UEF|1|B|U|75UEF|1|B|U|70BPh
5UEF|1|B|U|75UEF|1|B|U|8s35
5UEF|1|B|U|85UEF|1|A|A|10s55
5UEF|1|B|U|85UEF|1|A|A|9cWW
5UEF|1|B|U|85UEF|1|B|A|9s35
5UEF|1|B|U|85UEF|1|B|U|7s53
5UEF|1|B|U|85UEF|1|B|U|80BPh
5UEF|1|C|G|15UEF|1|A|G|14s53
5UEF|1|C|G|15UEF|1|C|G|10BPh
5UEF|1|C|G|15UEF|1|C|G|2s35
5UEF|1|C|G|25UEF|1|C|G|1s53
5UEF|1|C|G|25UEF|1|C|G|20BPh
5UEF|1|D|G|15UEF|1|B|G|14s53
5UEF|1|D|G|15UEF|1|D|G|10BPh
5UEF|1|D|G|15UEF|1|D|G|2s35
5UEF|1|D|G|25UEF|1|D|G|1s53
5UEF|1|D|G|25UEF|1|D|G|20BPh


Base-PairsCount (10)Relative Frequency
cWW101.000
Base-PhosphateCount (26)Relative Frequency
0BPh261.000
Base-StackingCount (15)Relative Frequency
s5380.533
s5570.467

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)