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As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5O7H  PDB ID: 5O7H 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5O7H|1|A|A|115O7H|1|A|A|110BPh
5O7H|1|A|A|115O7H|1|A|C|10s53
5O7H|1|A|A|125O7H|1|A|A|120BPh
5O7H|1|A|A|125O7H|1|A|A|13s35
5O7H|1|A|A|135O7H|1|A|A|12s53
5O7H|1|A|A|135O7H|1|A|A|130BPh
5O7H|1|A|A|175O7H|1|A|A|170BPh
5O7H|1|A|A|175O7H|1|A|U|16s53
5O7H|1|A|A|195O7H|1|A|A|190BPh
5O7H|1|A|A|195O7H|1|A|U|18s53
5O7H|1|A|A|205O7H|1|A|A|20n2BP
5O7H|1|A|A|205O7H|1|A|C|22n0BP
5O7H|1|A|A|275O7H|1|A|A|270BPh
5O7H|1|A|A|355O7H|1|A|A|350BPh
5O7H|1|A|A|355O7H|1|A|A|37s35
5O7H|1|A|A|355O7H|1|A|C|34s53
5O7H|1|A|A|355O7H|1|A|G|33ns33
5O7H|1|A|A|375O7H|1|A|A|35s53
5O7H|1|A|A|375O7H|1|A|C|32
5O7H|1|A|A|375O7H|1|A|C|360BPh
5O7H|1|A|A|375O7H|1|A|G|33tHS
5O7H|1|A|A|375O7H|1|A|G|38s35
5O7H|1|A|A|45O7H|1|A|G|5s35
5O7H|1|A|A|65O7H|1|A|A|60BPh
5O7H|1|A|A|65O7H|1|A|A|7s35
5O7H|1|A|A|65O7H|1|A|G|5ns53
5O7H|1|A|A|75O7H|1|A|A|6s53
5O7H|1|A|A|75O7H|1|A|A|70BPh
5O7H|1|A|A|85O7H|1|A|C|10ns35
5O7H|1|A|A|85O7H|1|A|G|9ncHS
5O7H|1|A|C|15O7H|1|A|C|10BPh
5O7H|1|A|C|15O7H|1|A|U|2ncSW
5O7H|1|A|C|105O7H|1|A|A|11s35
5O7H|1|A|C|105O7H|1|A|A|8ns53
5O7H|1|A|C|105O7H|1|A|C|10n0BP
5O7H|1|A|C|105O7H|1|A|G|9s53
5O7H|1|A|C|145O7H|1|A|U|16ns35
5O7H|1|A|C|155O7H|1|A|U|16ns35
5O7H|1|A|C|215O7H|1|A|C|22ns35
5O7H|1|A|C|225O7H|1|A|A|20
5O7H|1|A|C|225O7H|1|A|C|21ns53
5O7H|1|A|C|225O7H|1|A|C|22n0BP
5O7H|1|A|C|265O7H|1|A|C|26n0BP
5O7H|1|A|C|265O7H|1|A|U|25s53
5O7H|1|A|C|285O7H|1|A|C|280BPh
5O7H|1|A|C|285O7H|1|A|C|29s35
5O7H|1|A|C|285O7H|1|A|G|42cWW
5O7H|1|A|C|295O7H|1|A|C|28s53
5O7H|1|A|C|295O7H|1|A|C|290BPh
5O7H|1|A|C|295O7H|1|A|G|30s35
5O7H|1|A|C|295O7H|1|A|G|41cWW
5O7H|1|A|C|295O7H|1|A|G|42ns55
5O7H|1|A|C|315O7H|1|A|C|310BPh
5O7H|1|A|C|315O7H|1|A|C|32s35
5O7H|1|A|C|315O7H|1|A|G|30s53
5O7H|1|A|C|315O7H|1|A|G|39cWW
5O7H|1|A|C|325O7H|1|A|A|37
5O7H|1|A|C|325O7H|1|A|C|31s53
5O7H|1|A|C|325O7H|1|A|C|320BPh
5O7H|1|A|C|325O7H|1|A|G|33s35
5O7H|1|A|C|325O7H|1|A|G|38cWW
5O7H|1|A|C|325O7H|1|A|G|39s55
5O7H|1|A|C|345O7H|1|A|A|35s35
5O7H|1|A|C|345O7H|1|A|C|340BPh
5O7H|1|A|C|365O7H|1|A|C|360BPh
5O7H|1|A|C|405O7H|1|A|C|400BPh
5O7H|1|A|C|405O7H|1|A|G|30cWW
5O7H|1|A|C|405O7H|1|A|G|39s53
5O7H|1|A|C|405O7H|1|A|G|41s35
5O7H|1|A|G|305O7H|1|A|C|29s53
5O7H|1|A|G|305O7H|1|A|C|31s35
5O7H|1|A|G|305O7H|1|A|C|40cWW
5O7H|1|A|G|305O7H|1|A|G|300BPh
5O7H|1|A|G|305O7H|1|A|G|41s55
5O7H|1|A|G|335O7H|1|A|A|35ns33
5O7H|1|A|G|335O7H|1|A|A|37tSH
5O7H|1|A|G|335O7H|1|A|C|32s53
5O7H|1|A|G|335O7H|1|A|C|363BPh
5O7H|1|A|G|335O7H|1|A|G|330BPh
5O7H|1|A|G|385O7H|1|A|A|37s53
5O7H|1|A|G|385O7H|1|A|C|32cWW
5O7H|1|A|G|385O7H|1|A|G|380BPh
5O7H|1|A|G|385O7H|1|A|G|39s35
5O7H|1|A|G|395O7H|1|A|C|31cWW
5O7H|1|A|G|395O7H|1|A|C|32s55
5O7H|1|A|G|395O7H|1|A|C|40s35
5O7H|1|A|G|395O7H|1|A|G|38s53
5O7H|1|A|G|415O7H|1|A|C|29cWW
5O7H|1|A|G|415O7H|1|A|C|40s53
5O7H|1|A|G|415O7H|1|A|G|30s55
5O7H|1|A|G|415O7H|1|A|G|410BPh
5O7H|1|A|G|415O7H|1|A|G|42s35
5O7H|1|A|G|425O7H|1|A|C|28cWW
5O7H|1|A|G|425O7H|1|A|C|29ns55
5O7H|1|A|G|425O7H|1|A|G|41s53
5O7H|1|A|G|425O7H|1|A|G|420BPh
5O7H|1|A|G|55O7H|1|A|A|4s53
5O7H|1|A|G|55O7H|1|A|A|6ns35
5O7H|1|A|G|55O7H|1|A|G|50BPh
5O7H|1|A|G|95O7H|1|A|A|8ncSH
5O7H|1|A|G|95O7H|1|A|C|10s35
5O7H|1|A|U|165O7H|1|A|A|17s35
5O7H|1|A|U|165O7H|1|A|C|14ns53
5O7H|1|A|U|165O7H|1|A|C|15ns53
5O7H|1|A|U|165O7H|1|A|U|160BPh
5O7H|1|A|U|185O7H|1|A|A|19s35
5O7H|1|A|U|185O7H|1|A|U|180BPh
5O7H|1|A|U|25O7H|1|A|C|1ncWS
5O7H|1|A|U|245O7H|1|A|U|240BPh
5O7H|1|A|U|255O7H|1|A|C|26s35
5O7H|1|A|U|255O7H|1|A|U|25n0BP
5O7H|1|A|U|35O7H|1|A|U|30BPh


Base-PairsCount (6)Relative Frequency
cWW50.833
tHS10.167
Base-PhosphateCount (29)Relative Frequency
3BPh10.034
0BPh280.966
Base-StackingCount (10)Relative Frequency
s5380.800
s5520.200

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)