A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5O1Z  PDB ID: 5O1Z 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5O1Z|1|B|A|45O1Z|1|B|A|40BPh
5O1Z|1|B|A|45O1Z|1|B|A|5s35
5O1Z|1|B|A|55O1Z|1|B|A|4s53
5O1Z|1|B|A|55O1Z|1|B|A|50BPh
5O1Z|1|B|A|55O1Z|1|B|A|6s33
5O1Z|1|B|A|65O1Z|1|B|A|5s33n2BP
5O1Z|1|B|C|15O1Z|1|B|G|2s53
5O1Z|1|B|G|25O1Z|1|B|C|1s35
5O1Z|1|B|U|35O1Z|1|B|U|30BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (2)Relative Frequency
s3310.500
s5310.500

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)