A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5O1Y  PDB ID: 5O1Y 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5O1Y|1|B|A|35O1Y|1|B|A|30BPh
5O1Y|1|B|A|35O1Y|1|B|A|4s35
5O1Y|1|B|A|45O1Y|1|B|A|3s53
5O1Y|1|B|A|45O1Y|1|B|A|40BPh
5O1Y|1|B|G|15O1Y|1|B|U|2n1BP
5O1Y|1|B|U|25O1Y|1|B|U|20BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (0)Relative Frequency

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)