A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5XWP  PDB ID: 5XWP 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11CC_A5C6:G22U25_CC1.949-1.1633.2624.0017.18646.557-2.036-2.1073.2069.009-5.01547.238
15CC_A31C32:G28U29_DD0.085-1.7613.523-4.8429.1824.708-6.141-1.4162.64620.34410.73126.768
17CC_A33A34:U26U27_DD-0.233-0.9063.5130.15510.24538.777-2.5430.3593.18115.111-0.22940.058
18CC_A34A35:U25U26_DD-0.073-1.3893.6211.0046.78825.789-4.8790.4343.15314.876-2.20126.672
19CC_A35U36:A24U25_DD-0.039-1.6053.068-0.094.87721.756-5.7690.0722.64912.7160.23322.29
113CC_A39U40:A20U21_DD0.135-1.2793.2192.7637.84724.36-4.9180.4162.68217.938-6.31625.721
118CC_A44A45:U15U16_DD0.789-1.8783.655-0.82321.56726.178-6.444-1.481.65140.0571.52833.807
119CC_A45U46:A14U15_DD-0.18-1.2323.3582.8686.56826.957-4.0961.0442.94713.782-6.01827.877
121CC_A47A48:U12U13_DD-0.486-0.7023.3570.75514.37130.539-3.5090.9592.74825.576-1.34433.687
122CC_A48A49:U11U12_DD-0.231-1.0013.408-0.28614.38628.667-4.3510.3692.62127.010.53732.007
123CC_A49C50:G10U11_DD-0.131-0.8783.377-0.44110.73531.753-3.280.1552.93618.9540.77933.477
12CC_C6C7:G21G22_CC-0.537-1.3662.84-3.3415.8433.117-3.1470.472.60810.1155.78733.774
13CC_C7C8:G20G21_CC-0.707-1.4183.1451.8081.17835.294-2.4991.4173.0591.94-2.97835.358
14CC_C8C9:G19G20_CC-0.816-1.9953.282-6.8615.19721.28-6.805-0.3082.84213.38817.67622.936
16CC_C32A33:U27G28_DD0.718-1.112.9841.1787.37741.954-2.189-0.8842.77710.206-1.6342.585
111CC_C37U38:A22G23_DD0.238-1.7323.48-3.3375.98529.859-4.474-1.1163.03911.4276.3730.617
115CC_C41U42:A18G19_DD0.678-1.6013.2340.2155.66930.46-4.034-1.232.910.674-0.40630.971
124CC_C50U51:A9G10_DD0.605-1.3543.1342.53911.13425.024-5.27-0.7222.37524.154-5.50827.469
126CC_C52U53:A7G8_DD-0.293-1.4553.423-3.7114.74325.348-4.544-0.3813.11310.6198.30926.042
129CC_C55U56:A4G5_DD0.244-1.4682.8590.759-2.17730.339-2.41-0.332.96-4.153-1.44730.424
117CC_G43A44:U16C17_DD-0.124-1.0883.427-0.96213.44733.621-3.630.0652.80522.1721.58636.15
110CC_U36C37:G23A24_DD0.452-1.763.438-1.9137.81437.275-3.68-0.9332.99612.0532.95138.103
112CC_U38A39:U21A22_DD-1.1-1.2323.0462.5038.76735.445-3.0222.0562.59714.113-4.02936.562
114CC_U40C41:G19A20_DD0.037-0.7983.427-3.11311.31634.229-2.904-0.5043.00718.5625.10636.129
116CC_U42G43:C17A18_DD-0.709-1.1893.6071.17111.39330.108-4.2581.4972.94621.001-2.15932.165
120CC_U46A47:U13A14_DD0.339-0.6033.345-2.34119.34432.343-3.397-0.8242.56731.4243.80337.624
125CC_U51C52:G8A9_DD-0.151-0.7173.462-1.81510.94134.565-2.733-0.0193.10417.8542.96136.249
127CC_U53U54:A6A7_DD-0.519-2.7813.02-2.8275.94380.729-2.280.3342.8594.5812.17980.951
128CC_U54C55:G5A6_DD-0.855-0.5163.742-3.72410.263-19.431-3.148-3.8413.365-27.752-10.07-22.263
130CC_U56U57:A3A4_DD-0.27-0.5923.3083.79510.36837.64-2.1070.8513.00715.661-5.73339.17
131CC_U57C58:G2A3_DD-0.4050.0033.6940.08516.07835.563-2.2110.623.38724.82-0.13138.921
132EE_A5C6:G22U25_EE1.463-1.2053.5818.625.21752.904-1.694-1.023.6355.796-9.57753.787
137EE_A33A34:U26U27_FF0.104-0.6373.1352.59913.0130.677-3.1070.2192.65423.273-4.64933.36
138EE_A34A35:U25U26_FF-1.1-1.1093.343-3.4681.08333.692-2.0821.313.41.8625.96133.882
139EE_A35U36:A24U25_FF0.33-1.9033.1950.136.00212.535-12.788-1.2572.06825.65-0.55413.893
143EE_A39U40:A20U21_FF0.021-1.3713.383.78313.80733.535-4.0360.4712.6222.688-6.21636.382
148EE_A44A45:U15U16_FF0.976-1.5243.7391.77920.49826.629-6.03-1.3982.12138.099-3.30633.537
149EE_A45U46:A14U15_FF-0.659-1.0923.3330.0059.38225.296-4.6511.4142.75820.544-0.01126.953
151EE_A47A48:U12U13_FF-0.535-0.9153.223-1.81919.329.605-4.1340.6362.25633.6163.16935.268
152EE_A48A49:U11U12_FF-0.109-1.1063.4321.215.50229.591-4.4330.3842.54828.047-2.17133.346
153EE_A49C50:G10U11_FF-0.112-0.8843.3481.37710.03428.571-3.6790.4872.87119.57-2.68730.278
133EE_C6C7:G21G22_EE0.267-1.3132.533-3.6978.09724.829-4.413-1.2851.95518.1058.26626.353
134EE_C7C8:G20G21_EE-0.764-1.5873.399-1.049-1.53633.303-2.4971.1473.488-2.6771.82833.353
135EE_C8C9:G19G20_EE-0.61-1.723.16-0.3176.23328.49-4.6571.1492.73612.4770.63529.152
136EE_C32A33:U27G28_FF0.294-1.3143.2390.08711.24245.595-2.533-0.3632.85714.252-0.11146.888
141EE_C37U38:A22G23_FF-0.177-1.1593.6421.070.79731.0-2.3360.5583.6031.49-2.031.028
145EE_C41U42:A18G19_FF0.581-1.5733.2710.8193.44630.414-3.643-0.9423.0936.54-1.55430.615
154EE_C50U51:A9G10_FF0.34-1.2733.3731.14411.3229.016-4.459-0.4222.70921.576-2.18131.122
156EE_C52U53:A7G8_FF-0.512-1.9473.1-1.8061.69820.466-6.1330.6952.9644.7585.05820.614
159EE_C55U56:A4G5_FF-0.291-1.643.4140.9266.74721.682-6.5211.0632.76817.392-2.38722.714
147EE_G43A44:U16C17_FF-0.128-1.0483.2910.43913.02934.364-3.3640.262.72721.134-0.71336.684
140EE_U36C37:G23A24_FF1.238-1.243.291-2.65410.75840.622-2.786-1.9872.80615.1583.73942.044
142EE_U38A39:U21A22_FF-1.052-1.2563.105-1.49811.43228.57-4.3531.7232.48222.0642.89230.764
144EE_U40C41:G19A20_FF0.256-1.1143.41-4.7138.82131.863-3.397-1.2242.93915.5958.33333.357
146EE_U42G43:C17A18_FF-0.428-1.323.5451.09112.70330.361-4.520.9442.76923.021-1.97832.871
150EE_U46A47:U13A14_FF0.592-0.4123.232.02612.44732.047-2.589-0.6932.90521.533-3.50534.379
155EE_U51C52:G8A9_FF0.292-1.0373.341-5.2511.88339.381-2.707-0.962.86417.0787.54541.388
157EE_U53U54:A6A7_FF-0.335-2.9433.0462.6017.07978.545-2.4910.3282.8055.579-2.0578.847
158EE_U54C55:G5A6_FF-0.9820.4713.945-2.9345.514-7.163-15.501-12.6652.4-36.314-19.324-9.501
160EE_U56U57:A3A4_FF-0.239-1.5543.355-7.19214.58534.288-4.168-0.5042.51323.19211.43637.844
161EE_U57C58:G2A3_FF0.2730.2732.988.10516.06434.288-1.4610.5312.82425.213-12.7238.596

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.