A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XWP  PDB ID: 5XWP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_A5:U25_C0.4590.555-0.1591.5632.94715.044
16C_A31:U29_D-0.474-0.2820.5689.556-7.818-1.695
18C_A33:U27_D-0.9070.0160.2576.148-24.23516.315
19C_A34:U26_D0.5440.0460.083-0.195-16.72410.706
110C_A35:U25_D-0.1210.355-0.131-10.395-13.2290.704
114C_A39:U21_D0.5330.023-0.22-4.457-16.7250.962
119C_A44:U16_D0.662-0.345-0.584-0.782-12.408-4.253
120C_A45:U15_D0.0330.004-0.103-8.382-11.3483.491
122C_A47:U13_D0.032-0.03-0.3290.262-5.80411.144
123C_A48:U12_D0.1860.199-0.1840.898-25.4069.296
124C_A49:U11_D-0.042-0.157-0.324-1.597-17.784.599
12C_C6:G22_C-0.089-0.0480.501-11.678-7.1027.112
13C_C7:G21_C0.1620.4660.5043.825-19.9635.007
14C_C8:G20_C0.715-0.097-0.32510.174-17.1597.093
15C_C9:G19_C0.1330.057-0.0620.105-14.7620.618
17C_C32:G28_D-2.7-0.2390.6353.85-19.213-16.816
112C_C37:G23_D0.2610.0180.0693.173-18.8566.774
116C_C41:G19_D-0.059-0.303-0.126-2.379-18.323-7.272
125C_C50:G10_D0.4540.049-0.0272.477-18.5651.046
127C_C52:G8_D-0.3960.209-0.299-0.281-10.2385.927
130C_C55:G5_D-0.223-0.0740.298-2.25-19.81.773
133C_C58:G2_D0.661-0.3210.1613.162-10.3897.812
118C_G43:C17_D-0.266-0.174-0.505-6.417-16.6092.373
111C_U36:A24_D-0.8180.073-0.2653.882-13.3191.315
113C_U38:A22_D0.349-0.020.536-5.934-14.786-0.058
115C_U40:A20_D-0.345-0.132-0.530.601-19.2382.858
117C_U42:A18_D-0.26-0.008-0.0192.07-18.9126.253
121C_U46:A14_D0.5260.163-0.431.173-11.0375.716
126C_U51:A9_D-0.7420.471-0.1833.429-14.22115.388
128C_U53:A7_D-0.97-0.181-0.0530.032-14.8182.538
129C_U54:A6_D0.0482.9420.005-5.633-15.754-97.694
131C_U56:A4_D-1.306-0.1160.12611.633-17.04412.322
132C_U57:A3_D-0.227-0.423-0.27611.482-23.0734.188
134E_A5:U25_E0.4890.583-0.175-0.6461.65511.598
140E_A33:U27_F0.2470.532-0.114-13.395-15.12414.405
141E_A34:U26_F-0.1170.337-0.056-12.484-26.49320.721
142E_A35:U25_F0.772-0.5030.029-3.243-21.49-5.227
146E_A39:U21_F-0.0040.050.057-0.496-14.44-0.2
151E_A44:U16_F0.607-0.178-0.763-0.363-9.6353.154
152E_A45:U15_F0.352-0.002-0.367-10.263-13.36511.72
154E_A47:U13_F0.486-0.095-0.2976.167-17.72913.071
155E_A48:U12_F0.1630.007-0.2053.468-14.0795.453
156E_A49:U11_F-0.011-0.018-0.1531.693-16.4213.205
135E_C6:G22_E0.8530.3680.096-19.283-8.1352.263
136E_C7:G21_E-0.3140.4430.3147.707-20.41413.162
137E_C8:G20_E0.1440.13-0.1159.303-18.5232.962
138E_C9:G19_E0.405-0.09-0.59219.53-8.212.12
139E_C32:G28_F-1.987-0.0880.783-9.257-21.356-0.458
144E_C37:G23_F0.1410.3670.3585.349-23.77713.231
148E_C41:G19_F0.012-0.1760.177-2.752-7.516-4.167
157E_C50:G10_F-0.1620.265-0.2336.846-17.5751.393
159E_C52:G8_F0.579-0.1460.4982.343-13.1964.269
162E_C55:G5_F0.881-0.633-0.4260.918-18.049-5.424
165E_C58:G2_F1.474-0.051-0.16513.076-19.55721.518
150E_G43:C17_F-0.0640.122-0.494-7.323-10.6636.998
143E_U36:A24_F-1.34-0.182-0.4092.864-9.301-6.01
145E_U38:A22_F0.4170.0680.087-0.528-20.3336.281
147E_U40:A20_F-0.045-0.141-0.435-1.697-19.207-2.61
149E_U42:A18_F-0.257-0.0610.0473.204-14.3385.494
153E_U46:A14_F0.472-0.134-0.2210.326-15.9895.344
158E_U51:A9_F-0.6050.17-0.3091.789-11.7395.606
160E_U53:A7_F-1.06-0.2680.1988.096-9.728-3.387
161E_U54:A6_F-0.2063.423-0.322-5.283-20.188-92.337
163E_U56:A4_F-0.352-0.348-0.6410.605-10.9949.035
164E_U57:A3_F0.4980.1140.3732.062-18.1060.91

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.