A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5XUU  PDB ID: 5XUU 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A-19G-6:C-12U-11_BB2.417-1.9713.545-11.06412.57986.727-1.691-1.9793.0359.0887.99488.013
14BB_A-4G-3:C-15U-14_BB0.072-1.1623.1860.0155.44328.021-3.524-0.1422.91311.108-0.03128.534
16BB_A-2U-1:U-17U-16_BB-0.212-0.9183.5292.4396.81746.103-1.7640.4833.3548.642-3.09246.637
19BB_A2A3:DT-3DT-2_CC-0.15-0.3233.191-3.77611.52732.888-2.213-0.32.91619.5516.40434.996
110BB_A3A4:DT-4DT-3_CC0.59-1.1343.4375.4474.94431.496-2.948-0.0573.2798.955-9.86632.323
111BB_A4U5:DA-5DT-4_CC0.215-0.8383.391-1.2345.07127.727-2.918-0.7333.17810.4642.54628.205
114BB_A7G8:DC-8DT-7_CC0.12-1.6663.472.698-4.26630.005-2.2380.3643.663-8.167-5.16530.417
119BB_C12G13:DC-13DG-12_CC-0.576-1.7013.052-2.07611.08429.521-4.8760.7322.31320.8193.89931.556
121BB_C14U15:DA-15DG-14_CC-0.705-1.693.598-6.03118.41728.354-5.7160.2672.22533.1510.85634.231
12BB_G-6U-5:A-13C-12_BB-1.426-2.6053.148-3.911-0.70129.183-4.9751.9693.367-1.3837.71729.446
15BB_G-3A-2:U-16C-15_BB0.787-1.5783.1924.3828.84234.431-3.757-0.6912.79114.571-7.22135.776
17BB_G0G1:DC-1DC0_CC-1.05-0.1643.457-7.2664.22933.248-1.0020.5393.5547.24712.45234.265
18BB_G1A2:DT-2DC-1_CC0.526-0.2263.4752.79111.52632.708-2.248-0.4293.24619.678-4.76534.736
115BB_G8G9:DC-9DC-8_CC0.095-0.9313.113-2.8187.20234.686-2.498-0.5372.85211.8974.65435.512
116BB_G9U10:DA-10DC-9_CC-0.345-1.4243.465-0.2577.22728.475-4.3760.6263.02214.4010.51229.361
118BB_G11C12:DG-12DC-11_CC0.087-1.1413.2270.7158.91231.956-3.411-0.0392.81615.804-1.26833.151
120BB_G13C14:DG-14DC-13_CC0.115-1.3463.4031.5536.67433.692-3.3250.0483.0911.369-2.64534.362
124BB_G17G18:DC-18DC-17_CC-1.049-1.733.278-4.3633.86735.545-3.3441.083.1816.2817.08836.005
125BB_G18C19:DG-19DC-18_CC-0.102-1.9312.926.1661.51928.175-4.171.4062.733.07-12.46728.868
13BB_U-5A-4:U-14A-13_BB-0.615-1.383.031-0.03614.92732.451-4.0791.02.20625.120.06135.636
112BB_U5U6:DA-6DA-5_CC1.508-1.0833.3276.0871.30734.104-2.03-1.5483.4942.206-10.27234.651
113BB_U6A7:DT-7DA-6_CC-0.189-1.3993.4826.4931.07628.285-3.0411.8793.3022.166-13.06529.025
117BB_U10G11:DC-11DA-10_CC0.538-1.1732.902-1.0498.66332.992-3.159-1.0582.50514.9311.80834.095
122BB_U15U16:DA-16DA-15_CC0.081-0.8482.9711.648.32533.689-2.5430.0852.69214.088-2.77634.711
123BB_U16G17:DC-17DA-16_CC1.206-1.9383.6961.1574.66825.396-5.745-2.3483.34310.498-2.60225.84
129CC_DA4DG5:DC-5DT-4_DD0.413-0.9963.3981.8-0.33431.405-1.772-0.4113.426-0.617-3.32231.457
132CC_DA7DC8:DG-8DT-7_DD0.44-0.2672.8622.5251.89432.54-0.761-0.3982.8673.37-4.49232.689
133CC_DC8DG9:DC-9DG-8_DD-0.350.8433.114-4.022.78439.8320.9220.0673.1824.0685.87340.119
127CC_DG2DG3:DC-3DC-2_DD0.452-0.0053.121-0.6651.27433.748-0.205-0.8813.112.1931.14533.778
128CC_DG3DA4:DT-4DC-3_DD-0.217-0.063.5922.467-3.50242.0640.3110.5783.568-4.864-3.42642.272
130CC_DG5DG6:DC-6DC-5_DD-0.055-0.2723.3220.6126.73135.098-1.4240.183.21511.036-1.00335.722
131CC_DG6DA7:DT-7DC-6_DD-0.4960.2983.191-3.6551.58634.7130.260.2833.2352.6486.10134.934
126CC_DT1DG2:DC-2DA-1_DD-1.4642.0292.497-2.282-2.35731.9523.9882.3372.441-4.2674.13232.115

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.