A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XUU  PDB ID: 5XUU 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A-19:U-11_B-4.029-2.237-0.7499.146-12.219-94.757
14B_A-4:U-14_B0.079-0.0930.01-3.596-6.786-0.109
16B_A-2:U-16_B0.396-0.0460.0891.376-20.7338.498
110B_A2:DT-2_C-0.5090.026-0.449-15.411-24.45212.405
111B_A3:DT-3_C-0.046-0.128-0.085-8.986-24.0542.328
112B_A4:DT-4_C-0.305-0.081-0.31-14.31-13.5952.447
115B_A7:DT-7_C0.02-0.1-0.167-11.766-6.4650.688
120B_C12:DG-12_C-0.004-0.0110.2772.667-11.0325.823
122B_C14:DG-14_C-0.0160.0-0.0770.646-19.0253.794
127B_C19:DG-19_C-0.3770.025-0.79517.332-1.708-1.116
12B_G-6:C-12_B-0.104-0.1720.057-6.343-12.978-1.246
15B_G-3:C-15_B-0.279-0.1660.1512.371-10.35-1.999
18B_G0:DC0_C-0.304-0.096-0.309-5.1995.5342.48
19B_G1:DC-1_C-0.237-0.1310.028-8.977-18.295-0.296
116B_G8:DC-8_C-0.18-0.061-0.204-8.504-4.753-0.065
117B_G9:DC-9_C0.051-0.2240.301-0.713-13.1350.792
119B_G11:DC-11_C-0.012-0.0610.4081.382-9.8491.486
121B_G13:DC-13_C-0.145-0.1070.1744.526-9.1383.308
125B_G17:DC-17_C-0.379-0.032-0.44-7.163-8.6447.329
126B_G18:DC-18_C0.257-0.231-0.192-4.819-8.661.511
13B_U-5:A-13_B-0.0180.0610.127-5.139-12.0051.298
17B_U-1:U-17_B2.646-1.7910.17-7.35-25.311-3.323
113B_U5:DA-5_C-0.156-0.2650.025-10.225-7.355-0.708
114B_U6:DA-6_C-0.197-0.220.02-13.1144.0210.447
118B_U10:DA-10_C-0.182-0.0650.319-5.75-11.442-1.499
123B_U15:DA-15_C-0.298-0.0810.245-15.315-13.6912.276
124B_U16:DA-16_C0.185-0.076-0.21-0.909-14.581-0.072
131C_DA4:DT-4_D0.863-0.0630.49810.65-18.3970.08
134C_DA7:DT-7_D-0.311-0.1430.083-3.093-10.3964.138
135C_DC8:DG-8_D0.2980.019-0.18711.112-7.7598.439
129C_DG2:DC-2_D-0.043-0.1080.59518.745-4.254-4.903
130C_DG3:DC-3_D0.335-0.1270.8522.59-8.022-2.479
132C_DG5:DC-5_D0.053-0.050.2422.801-11.881.069
133C_DG6:DC-6_D-0.31-0.18-0.077-3.481-14.9611.698
136C_DG9:DC-9_D-0.181-0.1050.84216.518-8.504-2.374
128C_DT1:DA-1_D-0.9890.2040.233-30.91813.5992.436

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.