A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XUT  PDB ID: 5XUT 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A-19G-6:C-12U-11_BB2.456-2.0713.548-9.1711.3888.479-1.712-1.9383.118.116.53589.431
14BB_A-4G-3:C-15U-14_BB0.009-1.0543.229-0.076.24827.326-3.583-0.0352.9213.010.14628.018
16BB_A-2U-1:U-17U-16_BB-0.143-0.9233.319-2.165.40944.53-1.699-0.0083.1957.1022.83644.89
19BB_A2A3:DT-3DT-2_CC0.04-0.1743.159-1.68812.58933.064-2.069-0.3052.89821.1742.83935.356
110BB_A3A4:DT-4DT-3_CC0.49-1.0523.4413.3455.830.153-3.139-0.253.22210.979-6.33230.87
111BB_A4U5:DA-5DT-4_CC0.297-0.9453.314-1.0724.39527.168-3.05-0.8843.1119.2732.26227.535
114BB_A7G8:DC-8DT-7_CC0.088-1.6733.4641.655-2.74829.033-2.670.2143.603-5.459-3.28829.206
119BB_C12G13:DC-13DG-12_CC-0.453-1.7033.226-0.88811.62430.319-4.8810.6722.43721.2631.62432.434
121BB_C14U15:DA-15DG-14_CC-0.705-1.6833.53-4.22816.54130.849-5.1910.5522.41828.5227.2935.158
12BB_G-6U-5:A-13C-12_BB-1.434-2.6113.126-4.6961.85726.81-5.9861.9093.1423.9610.01527.273
15BB_G-3A-2:U-16C-15_BB0.675-1.513.3924.92811.05434.358-3.935-0.4062.85418.033-8.03936.367
17BB_G0G1:DC-1DC0_CC-1.04-0.1063.432-5.4156.44932.5-1.3190.8493.47211.2889.47933.545
18BB_G1A2:DT-2DC-1_CC0.557-0.1353.522.77210.7133.524-1.939-0.4763.35517.969-4.65135.252
115BB_G8G9:DC-9DC-8_CC-0.056-0.783.242-0.998.47734.259-2.5-0.0492.97214.121.64835.275
116BB_G9U10:DA-10DC-9_CC-0.354-1.2133.365-1.2096.91631.162-3.4510.4263.04312.6742.21531.924
118BB_G11C12:DG-12DC-11_CC-0.032-1.083.191-0.238.04429.17-3.5920.0182.815.6010.44730.237
120BB_G13C14:DG-14DC-13_CC0.249-1.2793.243-0.6268.61932.429-3.551-0.5282.81515.11.09833.531
124BB_G17G18:DC-18DC-17_CC-0.838-1.6853.401-0.6084.49536.314-3.311.2513.197.1780.97236.586
125BB_G18C19:DG-19DC-18_CC-0.103-1.6723.0913.596-0.68226.721-3.4211.0933.091-1.467-7.73426.966
13BB_U-5A-4:U-14A-13_BB-0.521-1.3343.0550.35713.73733.676-3.7920.882.34522.578-0.58636.296
112BB_U5U6:DA-6DA-5_CC1.543-1.0013.4028.7824.31834.659-2.286-1.1463.537.074-14.3935.973
113BB_U6A7:DT-7DA-6_CC-0.282-1.2293.4984.5120.42529.131-2.5121.5753.3980.838-8.90129.474
117BB_U10G11:DC-11DA-10_CC0.498-1.1153.055-1.43610.38931.51-3.489-1.0842.54518.52.55833.167
122BB_U15U16:DA-16DA-15_CC0.431-0.7993.0950.5976.62530.006-2.708-0.7052.86512.602-1.13630.718
123BB_U16G17:DC-17DA-16_CC1.198-1.9393.3940.4636.12827.553-5.373-2.3522.92212.668-0.95828.217
127CC_DA2DG3:DC-3DT-2_DD0.544-0.063.058-2.5130.2529.051-0.17-1.5883.00.4974.99729.158
129CC_DA4DG5:DC-5DT-4_DD0.523-0.8683.4283.30.13132.631-1.56-0.3283.460.232-5.85532.793
132CC_DA7DC8:DG-8DT-7_DD0.51-0.2433.1282.6473.88132.892-1.049-0.4683.1116.811-4.64533.216
133CC_DC8DG9:DC-9DG-8_DD-0.1270.8662.956-1.9551.13638.2171.192-0.0292.9821.7332.98338.281
128CC_DG3DA4:DT-4DC-3_DD-0.227-0.0193.4520.973-2.80742.0750.2780.4213.44-3.904-1.35342.175
130CC_DG5DG6:DC-6DC-5_DD0.033-0.243.396-0.8445.47433.954-1.288-0.1923.3169.2971.43434.389
131CC_DG6DA7:DT-7DC-6_DD-0.4730.233.067-3.61.04636.3640.230.2853.1031.6715.7536.551
126CC_DT1DA2:DT-2DA-1_DD-1.082.2992.736-1.3-2.50140.6313.531.4342.628-3.5961.86940.724

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.