A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5XUT  PDB ID: 5XUT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A-19:U-11_B-4.197-2.108-0.7159.239-14.253-96.756
14B_A-4:U-14_B0.006-0.064-0.033-5.21-7.9031.23
16B_A-2:U-16_B0.2370.015-0.24-5.408-25.0297.088
110B_A2:DT-2_C-0.358-0.056-0.492-14.499-24.98511.915
111B_A3:DT-3_C-0.003-0.157-0.377-10.197-22.5365.408
112B_A4:DT-4_C-0.273-0.12-0.23-13.39-11.5392.714
115B_A7:DT-7_C0.098-0.036-0.218-11.701-5.6682.202
120B_C12:DG-12_C-0.243-0.030.1893.019-12.4043.761
122B_C14:DG-14_C-0.342-0.056-0.0930.918-18.7924.406
127B_C19:DG-19_C-0.408-0.152-0.48910.895-1.4422.611
12B_G-6:C-12_B-0.085-0.1820.077-6.672-14.194-1.356
15B_G-3:C-15_B-0.429-0.1590.0620.279-13.322-0.935
18B_G0:DC0_C-0.268-0.111-0.133-6.3182.9583.461
19B_G1:DC-1_C-0.255-0.117-0.028-11.062-17.5431.969
116B_G8:DC-8_C-0.3550.005-0.209-8.574-7.4430.407
117B_G9:DC-9_C-0.085-0.2420.097-4.459-20.9442.635
119B_G11:DC-11_C0.1860.0840.255-1.765-12.5135.284
121B_G13:DC-13_C-0.313-0.1850.0592.062-11.942.652
125B_G17:DC-17_C-0.6340.072-0.117-1.387-6.6447.617
126B_G18:DC-18_C0.132-0.205-0.232-4.384-10.4434.902
13B_U-5:A-13_B-0.2230.0360.248-5.934-12.7060.886
17B_U-1:U-17_B2.528-1.6460.31-7.225-24.697-0.288
113B_U5:DA-5_C-0.323-0.2570.077-7.593-9.265-0.541
114B_U6:DA-6_C-0.195-0.159-0.214-14.33-0.6121.889
118B_U10:DA-10_C0.108-0.0510.188-3.36-16.184-0.512
123B_U15:DA-15_C-0.104-0.1330.023-8.769-15.3182.598
124B_U16:DA-16_C-0.2290.020.0640.453-13.0135.825
129C_DA2:DT-2_D0.4950.1690.27213.019-13.052-2.416
131C_DA4:DT-4_D0.481-0.1060.4989.564-14.9482.422
134C_DA7:DT-7_D-0.078-0.1590.325-1.38-12.3135.842
135C_DC8:DG-8_D0.821-0.174-0.0033.2670.5111.674
130C_DG3:DC-3_D-0.002-0.0540.63220.019-7.587-0.716
132C_DG5:DC-5_D0.0990.0280.1362.625-11.6235.174
133C_DG6:DC-6_D-0.25-0.0260.176-5.552-16.6617.193
136C_DG9:DC-9_D-0.271-0.2860.51717.874-0.5762.869
128C_DT1:DA-1_D-0.9220.147-0.107-18.9595.1822.409

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.