A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XUS  PDB ID: 5XUS 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_A-19G-6:C-12U-11_BB2.617-2.0253.351-9.119.75486.442-1.672-2.0882.9257.0856.61887.265
14BB_A-4G-3:C-15U-14_BB0.074-1.1483.2072.3246.01230.842-3.1790.2762.93411.152-4.31131.492
16BB_A-2U-1:U-17U-16_BB0.014-0.7963.3230.6384.78547.287-1.3750.0343.2325.948-0.79347.519
19BB_A2A3:DT-3DT-2_CC0.015-0.4953.266-1.92512.99832.424-2.741-0.3092.85922.1753.28434.919
110BB_A3A4:DT-4DT-3_CC0.259-0.8773.595.2233.71233.72-2.1210.4543.4766.327-8.90434.306
111BB_A4U5:DA-5DT-4_CC0.324-1.063.185-0.8115.49626.274-3.614-0.8942.89511.9211.7626.845
114BB_A7G8:DC-8DT-7_CC0.169-1.6523.4464.43-3.56729.71-2.3820.6513.603-6.877-8.54130.238
119BB_C12G13:DC-13DG-12_CC-0.509-1.423.507-2.76715.88430.542-4.8230.4372.5227.8514.85234.447
121BB_C14U15:DA-15DG-14_CC-0.742-1.6983.363-1.1817.69627.91-5.6751.1281.99132.8272.1932.974
12BB_G-6U-5:A-13C-12_BB-1.593-2.6483.242-1.493.13726.387-6.5413.0862.9976.8353.24626.61
15BB_G-3A-2:U-16C-15_BB0.965-1.7043.2293.5129.89430.316-4.736-1.1632.64918.244-6.47632.042
17BB_G0G1:DC-1DC0_CC-0.962-0.3943.598-5.9973.8431.149-1.4980.5293.6427.03710.98731.933
18BB_G1A2:DT-2DC-1_CC0.471-0.273.3530.6811.71235.434-2.0-0.6463.1218.623-1.08137.267
115BB_G8G9:DC-9DC-8_CC0.59-1.3543.154-1.0797.42631.72-3.599-1.2232.75313.3531.9432.573
116BB_G9U10:DA-10DC-9_CC-0.58-1.2783.3440.5295.74630.365-3.4981.193.04610.846-0.99830.896
118BB_G11C12:DG-12DC-11_CC0.016-0.9392.9672.4098.11231.407-2.9170.342.64314.655-4.35132.499
120BB_G13C14:DG-14DC-13_CC0.034-1.3543.154-2.2666.55733.568-3.254-0.3882.83811.2053.87234.258
124BB_G17G18:DC-18DC-17_CC-0.597-2.1793.13-3.7383.24632.43-4.380.4572.9525.7696.64432.796
125BB_G18C19:DG-19DC-18_CC0.13-2.0613.3072.1053.44631.049-4.4560.1483.0686.404-3.91231.304
13BB_U-5A-4:U-14A-13_BB-0.448-1.3973.011-3.45213.22433.733-3.8160.3082.3521.7145.66936.322
112BB_U5U6:DA-6DA-5_CC1.365-0.9433.4136.2-1.63133.621-1.324-1.2563.64-2.788-10.59934.21
113BB_U6A7:DT-7DA-6_CC0.056-1.33.3574.665-1.75729.816-2.1240.8753.396-3.385-8.98730.22
117BB_U10G11:DC-11DA-10_CC0.656-1.23.0670.61510.88832.948-3.494-1.0182.56518.575-1.04934.659
122BB_U15U16:DA-16DA-15_CC0.165-0.8123.172-1.7975.9132.823-2.342-0.572.97110.3453.14533.384
123BB_U16G17:DC-17DA-16_CC1.382-2.1483.5222.0723.70124.488-6.159-2.5583.278.643-4.8424.847
127CC_DA2DA3:DT-3DT-2_DD0.371-0.2063.016-1.587-1.29532.321-0.159-0.9233.0-2.3242.84732.384
128CC_DA3DA4:DT-4DT-3_DD-0.020.2193.372-2.174-7.35342.7641.028-0.193.29-9.9882.95343.414
129CC_DA4DG5:DC-5DT-4_DD0.443-0.9623.521.3111.22631.195-2.036-0.5553.4962.278-2.43531.245
132CC_DA7DC8:DG-8DT-7_DD0.562-0.3433.2271.295-1.07334.271-0.415-0.7523.255-1.82-2.19634.311
133CC_DC8DG9:DC-9DG-8_DD-0.2780.4423.361.52613.35838.434-0.9250.5793.31519.575-2.23740.633
130CC_DG5DG6:DC-6DC-5_DD0.338-0.3173.2965.5135.56731.003-1.5930.3953.20310.212-10.11131.954
131CC_DG6DA7:DT-7DC-6_DD-0.7720.6393.184-4.6890.5139.7560.8760.5983.2580.7476.86640.023
126CC_DT1DA2:DT-2DA-1_DD-0.4141.8482.894-1.458-3.15839.0023.0840.4672.755-4.7182.17839.15

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.