A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5XUS  PDB ID: 5XUS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_A-19:U-11_B-4.056-2.096-0.7046.155-10.63-96.57
14B_A-4:U-14_B-0.083-0.0370.26-1.902-10.467-1.998
16B_A-2:U-16_B-0.028-0.0620.143-2.094-21.6958.783
110B_A2:DT-2_C-0.156-0.017-0.182-9.126-22.79410.992
111B_A3:DT-3_C-0.119-0.168-0.035-9.061-24.7455.027
112B_A4:DT-4_C0.214-0.114-0.352-17.459-14.7961.588
115B_A7:DT-7_C0.012-0.1610.026-8.844-5.9271.091
120B_C12:DG-12_C0.073-0.154-0.1399.755-13.5812.482
122B_C14:DG-14_C0.247-0.088-0.0330.745-14.3933.021
127B_C19:DG-19_C0.055-0.019-0.042-1.542-2.6255.759
12B_G-6:C-12_B0.001-0.2480.15-2.871-11.88-0.714
15B_G-3:C-15_B0.038-0.2470.0981.724-9.7-4.157
18B_G0:DC0_C-0.203-0.073-0.198-1.9266.2662.591
19B_G1:DC-1_C-0.341-0.2690.12-7.355-15.05-0.434
116B_G8:DC-8_C-0.2-0.103-0.163-7.354-4.5571.262
117B_G9:DC-9_C-0.261-0.180.275-2.724-10.4663.906
119B_G11:DC-11_C0.010.0580.19-1.204-11.7444.599
121B_G13:DC-13_C-0.133-0.211-0.103-2.228-11.3871.418
125B_G17:DC-17_C-0.868-0.103-0.236-4.142-3.6667.067
126B_G18:DC-18_C-0.266-0.0240.303-2.056-0.1463.57
13B_U-5:A-13_B-0.188-0.1370.041-4.501-13.1151.149
17B_U-1:U-17_B2.54-1.7690.329-4.683-19.8013.9
113B_U5:DA-5_C-0.307-0.1040.188-11.227-12.6080.378
114B_U6:DA-6_C-0.34-0.040.134-14.1060.5130.855
118B_U10:DA-10_C-0.334-0.1980.126-4.645-10.607-3.007
123B_U15:DA-15_C0.043-0.132-0.145-5.992-15.9422.622
124B_U16:DA-16_C0.135-0.108-0.0543.548-5.7560.486
129C_DA2:DT-2_D0.283-0.022-0.0258.176-16.5675.193
130C_DA3:DT-3_D0.184-0.040.31216.168-12.6162.595
131C_DA4:DT-4_D0.148-0.0670.50710.284-17.0797.356
134C_DA7:DT-7_D-0.615-0.0170.14-3.87-12.405-0.229
135C_DC8:DG-8_D0.3710.1050.0731.804-7.8174.091
132C_DG5:DC-5_D-0.268-0.0920.145-3.392-11.6426.586
133C_DG6:DC-6_D-0.634-0.356-0.181-4.174-13.6891.35
136C_DG9:DC-9_D0.253-0.291-0.102-2.935-15.875-6.279
128C_DT1:DA-1_D-0.0220.034-0.011-14.6632.932-2.34

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.