A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XFR  PDB ID: 5XFR 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14EE_DC4DG5:DC8DG9_FF-1.550.7553.186-5.9330.64535.341.1341.6553.4061.0549.68735.824
17EE_DC7DC8:DG5DG6_FF-1.833-0.0583.706-8.897-7.47233.9711.21.4373.971-12.34914.70435.848
18EE_DC8DG9:DC4DG5_FF1.5410.7563.3877.514-0.9135.1151.368-1.3383.61-1.487-12.27835.896
110EE_DC10DC11:DG2DG3_FF1.6430.5483.2339.093.5839.1520.369-1.3033.5475.243-13.31440.306
111EE_DC11DC12:DG1DG2_FF-0.9210.6573.765-1.627-8.32539.0562.0531.1363.59-12.2772.39939.931
11EE_DG1DG2:DC11DC12_FF0.2651.1723.366-2.312-4.78435.5622.584-0.763.164-7.783.75935.944
12EE_DG2DG3:DC10DC11_FF-1.5660.8293.455-7.0144.58939.1930.6261.3943.7396.74710.31340.045
13EE_DG3DC4:DG9DC10_FF0.9780.5273.4833.103-4.91239.121.394-1.0583.459-7.287-4.60439.532
15EE_DG5DG6:DC7DC8_FF1.672-0.3333.8658.281-6.18633.630.606-1.2194.144-10.391-13.90935.139
16EE_DG6DC7:DG6DC7_FF-0.247-0.1332.746-0.18311.65326.686-2.3970.4592.47423.8540.37429.078
19EE_DG9DC10:DG3DC4_FF-0.4990.5583.347-4.258-4.49638.6461.3850.2233.299-6.746.38439.12

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.