A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
Search for released structures

NDB ID: 5XFR  PDB ID: 5XFR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14E_DC4:DG9_F0.047-0.2670.202-7.880.6421.305
17E_DC7:DG6_F0.448-0.009-0.46211.0757.9413.286
18E_DC8:DG5_F0.149-0.2790.5711.996-20.599-7.973
110E_DC10:DG3_F-0.1120.080.594.793-16.056-2.28
111E_DC11:DG2_F0.182-0.006-0.0787.004-6.5474.251
112E_DC12:DG1_F-0.417-0.157-0.027-4.383-2.251-4.478
11E_DG1:DC12_F-0.007-0.198-0.038-3.656-4.069-1.932
12E_DG2:DC11_F-0.347-0.1180.154-1.29-3.562.281
13E_DG3:DC10_F0.023-0.1650.425-5.085-20.834-2.953
15E_DG5:DC8_F0.001-0.1740.435-1.849-14.89-6.045
16E_DG6:DC7_F-0.657-0.085-0.565-15.3667.1034.386
19E_DG9:DC4_F-0.16-0.1920.0482.609-3.0621.821

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.