A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XFQ  PDB ID: 5XFQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DC4:DG9_D-0.421-0.137-0.153.796-5.7734.207
17C_DC7:DG6_D0.449-0.176-0.28912.6118.4742.293
18C_DC8:DG5_D-0.068-0.1410.1876.231-20.379-10.43
110C_DC10:DG3_D-0.3130.0540.871-7.352-22.156-3.606
111C_DC11:DG2_D-0.169-0.0340.607-12.478-8.9572.201
112C_DC12:DG1_D0.524-0.1710.22712.575-14.1032.05
11C_DG1:DC12_D0.04-0.1490.285-8.87211.6414.125
12C_DG2:DC11_D-0.341-0.313-0.701-8.151-10.9854.02
13C_DG3:DC10_D0.567-0.4980.49-0.346-17.801-9.571
15C_DG5:DC8_D0.494-0.0770.3963.168-13.111-10.875
16C_DG6:DC7_D-0.7750.359-0.437-12.76212.9756.904
19C_DG9:DC4_D-0.434-0.1620.1442.028-4.6568.808

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.