A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5XFP  PDB ID: 5XFP 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_DC4DG5:DC8DG9_DD-1.5270.8193.283-6.9580.76434.5731.2321.4343.5311.26911.56235.254
17CC_DC7DC8:DG5DG6_DD-1.895-0.0433.562-6.448-10.2535.921.441.9743.711-16.06810.10737.843
18CC_DC8DG9:DC4DG5_DD1.6850.7243.3478.0990.93135.0351.03-1.4783.6511.521-13.23235.942
110CC_DC10DC11:DG2DG3_DD1.4970.0633.316.7525.6538.82-0.598-1.3763.4878.37-10.00239.768
111CC_DC11DC12:DG1DG2_DD0.270.8843.1126.3257.55331.3290.2780.6013.22413.573-11.36632.804
11CC_DG1DG2:DC11DC12_DD-0.611.7933.149-4.397-2.44236.6113.1440.3953.077-3.8656.95936.943
12CC_DG2DG3:DC10DC11_DD-1.561.0153.494-8.5870.57138.8941.4161.1753.7550.84412.70739.798
13CC_DG3DC4:DG9DC10_DD1.3950.5973.4076.857-4.52339.0981.432-1.1993.505-6.669-10.11139.919
15CC_DG5DG6:DC7DC8_DD1.947-0.4863.7868.569-5.10433.3440.156-1.6324.172-8.658-14.53534.763
16CC_DG6DC7:DG6DC7_DD-0.154-0.3412.917-1.23310.90825.502-3.0140.062.56223.3782.64227.729
19CC_DG9DC10:DG3DC4_DD-0.9840.3213.503-5.74-0.82141.0010.5490.7233.595-1.1658.14541.391

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.