A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5XFP  PDB ID: 5XFP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_DC4:DG9_D0.373-0.2280.017-2.823-2.5755.061
17C_DC7:DG6_D0.4050.129-0.2698.2159.9565.348
18C_DC8:DG5_D0.144-0.1460.4473.489-16.589-8.21
110C_DC10:DG3_D-0.11-0.1510.452-2.297-14.048-2.621
111C_DC11:DG2_D0.1580.0020.247-8.535-9.0045.493
112C_DC12:DG1_D0.515-0.173-0.1860.548-2.520.845
11C_DG1:DC12_D-0.3530.271-0.05-9.961-7.3059.598
12C_DG2:DC11_D-0.3590.0820.229-0.102-5.9924.198
13C_DG3:DC10_D-0.086-0.1270.568-2.797-21.663-3.889
15C_DG5:DC8_D-0.072-0.2220.4431.443-12.347-7.056
16C_DG6:DC7_D-0.5680.195-0.544-12.30510.1726.635
19C_DG9:DC4_D-0.349-0.0560.0062.36-5.7224.401

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.