A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5X07  PDB ID: 5X07 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
19DD_DA9DC10:DG7DT8_EE0.55-0.7193.0470.496-0.65735.013-1.102-0.8443.067-1.091-0.82435.022
111DD_DA11DT12:DA5DT6_EE0.005-0.6583.1790.807-2.03435.113-0.7930.1093.211-3.367-1.33635.179
12DD_DC2DT3:DA14DG15_EE0.4660.2183.219-1.8183.54738.415-0.1-0.9263.2015.3732.75438.614
110DD_DC10DA11:DT6DG7_EE-0.477-0.7073.84-0.193-3.89532.012-0.4510.8193.899-7.030.34832.243
15DD_DG5DT6:DA11DC12_EE-0.169-0.7723.089-3.577-0.130.113-1.458-0.3593.091-0.1926.85530.32
11DD_DT1DC2:DG15DA16_EE1.0560.63.4171.492-0.30131.7681.153-1.643.456-0.549-2.72431.804
13DD_DT3DT4:DA13DA14_EE0.308-0.0553.2761.8042.51140.333-0.362-0.2423.2773.636-2.61240.447
14DD_DT4DG5:DC12DA13_EE0.076-0.6443.6123.4527.75732.885-2.4530.473.36813.425-5.97433.934
16DD_DT6DT7:DA10DA11_EE0.707-0.3563.1225.2954.54329.302-1.583-0.3153.1098.823-10.28530.104
17DD_DT7DT8:DA9DA10_EE-0.487-0.0943.176-0.8688.67537.876-1.1680.6293.09113.1521.31638.831
18DD_DT8DA9:DT8DA9_EE-0.068-0.3573.226-1.6848.21828.432-2.387-0.2143.00616.2893.33829.619
112DD_DT12DT13:DA4DA5_EE-0.279-0.3653.233-0.5191.36435.267-0.8020.3843.222.250.85735.296
113DD_DT13DT14:DA3DA4_EE-0.3-0.3033.283-0.922-3.23739.867-0.0690.3313.303-4.7361.3540.003
114DD_DT14DT15:DA2DA3_EE0.6130.3853.1253.3653.44140.6310.187-0.5213.1844.935-4.82540.903
115DD_DT15DG16:DC1DA2_EE-0.2361.323.386-6.0320.17641.5251.825-0.3243.3920.2478.45441.942
124AA_DA9DC10:DG7DT8_BB0.384-0.8443.064-0.7890.14133.928-1.467-0.7753.0510.2421.35133.937
126AA_DA11DT12:DA5DT6_BB-0.456-0.7553.1511.563-0.56133.415-1.2231.0413.139-0.976-2.71733.455
117AA_DC2DT3:DA14DG15_BB-0.7350.5643.285-1.6183.05534.5750.470.9793.3515.1242.71434.742
125AA_DC10DA11:DT6DG7_BB0.022-0.7173.650.463-3.97531.881-0.4910.0553.71-7.201-0.83932.125
120AA_DG5DT6:DA11DC12_BB-0.296-0.7983.243-0.5624.76828.727-2.6010.4693.0789.5251.12329.117
116AA_DT1DC2:DG15DA16_BB0.572.1473.662-0.241-1.73745.6642.933-0.7573.579-2.2370.3145.696
118AA_DT3DT4:DA13DA14_BB0.991-0.0773.4460.644-0.86138.057-0.002-1.4333.462-1.321-0.98738.072
119AA_DT4DG5:DC12DA13_BB0.408-0.3183.2343.0437.99233.781-1.73-0.2263.10413.487-5.13534.816
121AA_DT6DT7:DA10DA11_BB0.532-0.4053.0935.1651.82429.918-1.121-0.0243.113.495-9.930.404
122AA_DT7DT8:DA9DA10_BB-0.289-0.1533.298-1.4539.83437.125-1.4680.2573.16715.1162.23338.387
123AA_DT8DA9:DT8DA9_BB0.141-0.1893.4030.0387.58629.681-1.909-0.2593.25614.512-0.07330.614
127AA_DT12DT13:DA4DA5_BB0.111-0.4923.272-1.463-0.04136.354-0.782-0.3813.266-0.0652.34436.383
128AA_DT13DT14:DA3DA4_BB-0.26-0.2223.167-0.175-3.82139.2040.110.3653.175-5.6770.26139.383
129AA_DT14DT15:DA2DA3_BB0.8330.5823.2012.3653.6838.8340.43-0.9623.2835.514-3.54439.07
130AA_DT15DG16:DC1DA2_BB-0.3761.6233.332-6.3521.66243.7941.994-0.1143.4082.2138.4644.26
139GG_DA9DC10:DG7DT8_HH0.647-0.7832.981-1.7671.41135.71-1.458-1.2822.9142.2982.87835.779
141GG_DA11DT12:DA5DT6_HH0.133-0.7333.4151.639-0.32636.131-1.1330.0273.424-0.525-2.64136.168
132GG_DC2DT3:DA14DG15_HH-0.1320.3253.148-2.3225.9235.37-0.296-0.1083.1629.6463.78435.919
140GG_DC10DA11:DT6DG7_HH-0.422-0.7713.728-1.063-6.18132.734-0.1470.533.817-10.8441.86533.314
135GG_DG5DT6:DA11DC12_HH-0.246-0.9843.209-2.5632.73425.525-2.945-0.1433.0986.1455.76125.794
131GG_DT1DC2:DG15DA16_HH3.1941.9183.106-1.179-7.89732.5874.448-5.7052.473-13.8162.06333.525
133GG_DT3DT4:DA13DA14_HH0.886-0.0893.3321.1732.68238.579-0.471-1.1913.3434.052-1.77338.685
134GG_DT4DG5:DC12DA13_HH0.28-0.4353.2164.01511.09833.076-2.3370.1192.93618.766-6.78935.063
136GG_DT6DT7:DA10DA11_HH0.711-0.3293.1825.4053.41431.876-1.177-0.3383.2056.139-9.71932.494
137GG_DT7DT8:DA9DA10_HH-0.55-0.2423.264-0.179.96534.59-1.7990.8663.08116.3440.27935.955
138GG_DT8DA9:DT8DA9_HH0.005-0.2713.356-1.0828.63927.798-2.459-0.253.12917.4472.18529.104
142GG_DT12DT13:DA4DA5_HH-0.154-0.5093.188-0.571.35334.562-1.060.1743.1682.2760.95834.592
143GG_DT13DT14:DA3DA4_HH-0.309-0.443.135-0.827-4.34138.676-0.1510.3673.17-6.5281.24438.918
144GG_DT14DT15:DA2DA3_HH0.3650.2813.2024.654.09341.719-0.027-0.0333.2355.71-6.48642.156
145GG_DT15DG16:DC1DA2_HH-0.9691.5233.253-9.0781.34940.0932.0190.363.4311.93713.03541.088
154JJ_DA9DC10:DG7DT8_KK0.731-0.532.998-0.911-0.99638.81-0.686-1.2012.993-1.4991.3738.833
156JJ_DA11DT12:DA5DT6_KK0.129-0.7683.171.344-3.03235.217-0.826-0.0183.225-4.998-2.21535.367
147JJ_DC2DT3:DA14DG15_KK0.1840.7223.2442.628-5.08433.8632.0020.0913.111-8.651-4.47334.329
155JJ_DC10DA11:DT6DG7_KK-0.487-0.7083.791-0.759-0.56731.261-1.1890.7363.814-1.0511.40831.275
150JJ_DG5DT6:DA11DC12_KK-0.353-0.5363.15-1.6625.84929.056-2.2180.3563.00211.53.26729.672
146JJ_DT1DC2:DG15DA16_KK0.2042.1274.198-0.8932.78549.8962.255-0.3264.2993.2981.05849.976
148JJ_DT3DT4:DA13DA14_KK0.6650.2013.2410.396-0.2133.9580.378-1.0763.247-0.36-0.67733.961
149JJ_DT4DG5:DC12DA13_KK0.838-0.1953.1830.73212.44631.664-2.262-1.3212.9221.783-1.28133.971
151JJ_DT6DT7:DA10DA11_KK0.811-0.2163.465.7170.88530.877-0.579-0.3393.5421.645-10.6231.401
152JJ_DT7DT8:DA9DA10_KK-0.7540.0243.311-0.85910.87537.859-1.2791.0163.21316.351.29239.344
153JJ_DT8DA9:DT8DA9_KK0.14-0.3523.1571.7727.75524.256-2.9060.1652.90817.852-4.07925.509
157JJ_DT12DT13:DA4DA5_KK0.293-0.3713.378-1.2280.86938.774-0.667-0.5953.3591.3081.84938.802
158JJ_DT13DT14:DA3DA4_KK-0.196-0.2323.0650.636-1.89837.043-0.1270.3883.069-2.984-1.037.095
159JJ_DT14DT15:DA2DA3_KK0.1960.413.2624.582.78741.3260.2810.213.2843.929-6.45741.657
160JJ_DT15DG16:DC1DA2_KK-0.261.3473.372-6.1682.35843.091.577-0.2723.4423.1898.33943.569

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.