A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
Search for released structures

NDB ID: 5X07  PDB ID: 5X07 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19D_DA9:DT8_E0.446-0.1750.1091.069-3.2572.265
111D_DA11:DT6_E-0.088-0.334-0.142-6.71-11.6042.77
12D_DC2:DG15_E-1.305-0.235-0.148-1.839-11.038-3.623
110D_DC10:DG7_E0.661-0.080.00412.919-2.10910.459
15D_DG5:DC12_E-0.033-0.14-0.304-15.752-2.4182.603
116D_DG16:DC1_E0.583-0.0510.046-6.23-9.8910.017
11D_DT1:DA16_E-0.6290.253-0.4733.147-13.126-14.494
13D_DT3:DA14_E-0.427-0.0550.3215.128-18.2176.093
14D_DT4:DA13_E0.462-0.2170.231-0.015-18.8048.831
16D_DT6:DA11_E-0.197-0.20.118-3.70.7592.364
17D_DT7:DA10_E-0.523-0.036-0.146-2.607-4.9179.947
18D_DT8:DA9_E0.509-0.217-0.0383.892-8.8364.041
112D_DT12:DA5_E-0.072-0.2630.089-3.846-12.9183.253
113D_DT13:DA4_E-0.489-0.3370.152-7.673-18.8590.169
114D_DT14:DA3_E-0.013-0.2970.178-11.721-22.295-3.022
115D_DT15:DA2_E0.869-0.0510.072-10.813-16.0386.932
125A_DA9:DT8_B0.5470.2230.0290.222-5.9745.162
127A_DA11:DT6_B-0.322-0.1290.134-7.213-11.9628.194
118A_DC2:DG15_B-0.460.060.44-8.036-8.338.645
126A_DC10:DG7_B0.609-0.2880.1719.421-4.3887.46
121A_DG5:DC12_B0.1410.028-0.174-4.9163.3715.676
132A_DG16:DC1_B0.116-0.1660.076-4.76-11.1675.288
117A_DT1:DA16_B-0.3520.028-0.052-6.058-26.7311.414
119A_DT3:DA14_B-0.301-0.2590.364-1.331-17.993-2.525
120A_DT4:DA13_B0.03-0.0290.303-5.019-9.4847.29
122A_DT6:DA11_B-0.221-0.2950.0521.178-7.3312.823
123A_DT7:DA10_B-0.817-0.203-0.340.989-7.0566.745
124A_DT8:DA9_B0.132-0.028-0.1515.909-5.3973.857
128A_DT12:DA5_B-0.44-0.407-0.016-4.504-12.237-0.975
129A_DT13:DA4_B-0.625-0.350.345-8.215-19.2623.26
130A_DT14:DA3_B-0.339-0.120.086-9.196-21.4052.561
131A_DT15:DA2_B0.1160.330.184-10.974-17.51517.372
141G_DA9:DT8_H0.1050.1950.0264.063-4.660.857
143G_DA11:DT6_H0.007-0.5050.25-2.547-12.8060.376
134G_DC2:DG15_H-0.937-0.136-0.284-9.135-5.386-1.009
142G_DC10:DG7_H0.5030.0410.03814.661-2.9178.266
137G_DG5:DC12_H0.479-0.027-0.153-4.43-0.8011.766
148G_DG16:DC1_H0.568-0.1950.041-2.144-6.857-9.767
133G_DT1:DA16_H1.2220.695-0.475-12.083-15.772-73.015
135G_DT3:DA14_H-0.257-0.37-0.039-0.421-18.654-1.341
136G_DT4:DA13_H0.255-0.1790.127-3.566-9.1544.467
138G_DT6:DA11_H-0.728-0.0850.0892.591-1.6-0.069
139G_DT7:DA10_H-0.3010.146-0.2953.137-2.0475.795
140G_DT8:DA9_H0.2510.016-0.1529.026-5.6280.363
144G_DT12:DA5_H0.082-0.3320.232-5.605-13.0571.672
145G_DT13:DA4_H-0.395-0.0340.389-8.168-17.6851.544
146G_DT14:DA3_H0.161-0.1150.188-7.501-19.567-2.403
147G_DT15:DA2_H1.187-0.208-0.057-9.521-20.3667.302
157J_DA9:DT8_K-0.214-0.08-0.1340.659-5.967-0.239
159J_DA11:DT6_K-0.358-0.515-0.09-8.319-11.710.818
150J_DC2:DG15_K0.7140.0660.648-17.042-14.583.246
158J_DC10:DG7_K0.617-0.186-0.18113.881-4.2498.783
153J_DG5:DC12_K-0.4310.1940.134-7.4492.02110.547
164J_DG16:DC1_K1.0450.13-0.123-10.129-8.190.706
149J_DT1:DA16_K-0.686-0.121-0.107-1.726-24.158-2.779
151J_DT3:DA14_K0.1960.1730.422-8.621-23.7427.945
152J_DT4:DA13_K-0.398-0.0650.168-7.89-9.6949.057
154J_DT6:DA11_K-0.714-0.1580.3850.026-9.2898.043
155J_DT7:DA10_K-0.9850.406-0.181-6.32-6.60416.198
156J_DT8:DA9_K0.540.0710.022-2.761-2.1280.132
160J_DT12:DA5_K-0.308-0.2860.152-5.349-14.011.447
161J_DT13:DA4_K0.332-0.0780.697-12.948-18.0857.472
162J_DT14:DA3_K-0.263-0.2010.592-14.618-22.6286.25
163J_DT15:DA2_K0.549-0.0420.018-15.835-17.1176.854

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.