A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5W4K  PDB ID: 5W4K 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17281A1A_4OC1942G1943:C1931G1932_1A1A-0.051-2.3463.4663.411-3.19123.915-4.4541.3043.7-7.608-8.13224.36
17341A1A_5MC1964U1965:A1958U1962_1A1A-2.945-1.1760.537-44.874165.236129.79-0.6821.4480.33383.01722.545176.278
111A1A_A6G7:C2905U2906_1A1A1.152-1.8093.5581.4118.84322.02-7.39-2.0231.61240.952-3.06428.939
131A1A_A8U9:A2641U2904_1A1A0.274-2.0893.5742.206-0.665-51.6092.4470.4773.5350.7632.533-51.657
1111A1A_A21C22:G543U544_1A1A0.96-1.2983.1841.5591.44631.944-2.606-1.4673.1652.624-2.82832.012
1171A1A_A28U29:U536G537_1A1A-0.730.0153.173-4.08718.36251.532-1.0750.5533.06120.3624.53354.637
1271A1A_A38C39:G466U467_1A1A-0.245-1.0453.1110.5887.41230.871-3.1560.5462.78613.677-1.08531.732
1321A1A_A43G44:C460U461_1A1A-0.031-0.522.792-4.2334.1130.44-1.642-0.6312.6817.7367.96930.993
1631A1A_A48G166:A149U118_1A1A3.4691.177-0.42633.318171.5661.309-0.084-1.6051.81288.32-17.152174.772
1501A1A_A63C64:G88U89_1A1A1.866-0.1333.158-5.966-0.856-14.3881.2011.9343.6183.238-22.572-15.593
1731A1A_A77G78:C105U106_1A1A0.013-1.6063.2213.96910.44434.201-3.970.4992.6217.199-6.53635.928
1621A1A_A116A48:U118G50_1A1A3.8691.5471.248-62.227-143.567145.2330.884-1.9850.327-72.26431.322173.016
1611A1A_A117A116:G50A51_1A1A3.011-2.827-3.91367.243147.56-103.6722.391.071-2.28-75.49534.403-169.004
1421A1A_A179A180:A193U195_1A1A0.7881.4383.1795.2051.877-91.829-1.0340.6443.118-1.3053.621-91.959
1431A1A_A180C181:C192A193_1A1A-0.817-1.5863.0923.576-0.353113.015-0.9470.5283.078-0.212-2.143113.052
11231A1A_A210G255:C453U454_1A1A2.203-2.2074.049-8.5598.28985.361-1.838-1.8433.6756.0886.28686.03
11051A1A_A211G213:C220G221_1A1A0.5370.8643.224-0.8967.13256.5030.512-0.6133.2947.50.94256.921
11071A1A_A214G215:A217U219_1A1A0.5490.3322.8530.84715.43929.195-1.79-0.8382.728.268-1.55132.958
11211A1A_A222G209:A455A456_1A1A0.355-3.725-1.205102.977-120.434-6.6160.316-1.171-3.12767.92658.08-158.493
11081A1A_A240G241:C235G236_1A1A2.054-1.4083.0964.9517.68745.648-2.395-2.2073.0299.793-6.30746.507
11121A1A_A244A245:A230U232_1A1A1.1860.913.3887.440.403-88.361-0.661.0083.298-0.2895.33-88.61
11131A1A_A245A246:G229A230_1A1A-0.012-1.1853.2-0.625-2.429117.178-0.670.0013.215-1.4230.366117.195
11141A1A_A246G247:U228G229_1A1A0.419-0.7493.665-10.0816.06557.143-1.122-1.0163.4646.26710.41758.242
11191A1A_A251G457:C223U224_1A1A3.5641.7431.618160.822-71.898-102.106-0.7791.989-0.33936.12380.8-177.587
11281A1A_A259A260:G284U285_1A1A3.939-0.0522.882-10.8377.3957.214-1.987-17.747-1.48234.55950.64914.965
11871A1A_A348G349:C361G362_1A1A0.164-1.5743.340.4090.64546.66-2.042-0.1723.320.814-0.51646.666
1751A1A_A370A371:U317A318_1A1A0.627-1.7725.145-6.2815.50631.687-4.578-2.7494.5769.87211.26132.742
1761A1A_A371G372:C316U317_1A1A-0.181-1.5123.348-0.7774.68828.929-3.9890.1933.0749.3051.54229.308
1851A1A_A381U382:A306U308_1A1A-2.513-2.3763.134-4.545-4.45983.863-1.671.773.342-3.3323.39784.059
1871A1A_A383G384:C304G305_1A1A0.516-0.6143.7991.9528.14557.348-1.135-0.4133.7028.437-2.02257.905
11381A1A_A388G389:C295U296_1A1A-0.947-1.4053.3992.7719.99630.326-4.2832.1972.71618.443-5.11232.012
12011A1A_A401A428:U400G427_1A1A-5.562.9490.157-174.836-13.679-22.33-1.637-0.722-5.1826.985-89.279-175.458
12021A1A_A428A429:A450U400_1A1A1.529-3.1883.182-1.97811.271-84.3592.0911.0853.535-8.359-1.467-84.987
11561A1A_A439G2417:A2424A2423_1A1A5.8121.294-4.0578.9826.619-31.17-0.5667.896-5.624-11.85216.083-33.06
11531A1A_A442C441:G2421U2420_1A1A-0.261.189-2.970.246-8.561-31.799-3.359-0.495-2.5715.2810.439-32.904
1231A1A_A480G35:C471A475_1A1A2.5433.907-1.143-11.154173.365178.5531.96-1.271-1.09686.6835.577179.921
12031A1A_A483U485:A496A497_1A1A2.0822.51.28-127.593119.441110.5740.99-1.3191.15960.03864.136177.025
12051A1A_A486C487:G494G495_1A1A0.217-0.5363.115-3.0959.01762.004-0.898-0.343.0068.6982.98662.661
12071A1A_A517G518:C513G514_1A1A1.041-0.9492.9751.8637.37854.36-1.426-1.032.8658.032-2.02854.85
12121A1A_A522G523:G531A508_1A1A-1.251-0.8943.889-0.4686.99100.441-0.7080.8043.8434.5440.304100.619
11841A1A_A526A530:A506A503_1A1A-0.2210.676.3278.3071.217-66.68-0.6980.4276.301-1.1027.526-67.146
11861A1A_A528C534:G507A505_1A1A1.697-2.747-5.491-166.47421.23973.322-1.0481.742-4.91610.92985.662170.239
11851A1A_A530A528:A505A506_1A1A0.4320.1273.219-5.706-2.436132.6140.086-0.2743.207-1.333.115132.688
12131A1A_A554G2045:C2062U2063_1A1A1.191-2.13.52-3.1193.73876.193-1.815-1.0613.3863.0262.52576.324
12231A1A_A561C562:G579U580_1A1A0.21-1.1463.2170.1797.86530.441-3.504-0.3572.84114.673-0.33531.418
12311A1A_A598U599:C588U589_1A1A-0.926-2.1423.359-9.2323.77536.509-3.8080.2043.2595.89214.40937.802
12341A1A_A601G2040:C556G586_1A1A0.743-4.4953.621-3.01611.459-2.112-12.246-5.3225.102-77.298-20.342-12.035
12551A1A_A613C614:G713U714_1A1A0.436-0.8023.2872.52511.70333.054-3.034-0.3552.87219.78-4.26835.099
12661A1A_A626G627:C649G650_1A1A-2.48-3.1022.98985.003-120.54101.131-0.7081.8723.031-63.182-44.555159.521
12711A1A_A632G633:C643G644_1A1A1.041-0.4863.681-4.7625.64261.885-0.756-1.2473.5495.4654.61362.281
12761A1A_A662G663:C675G676_1A1A-1.91-3.9152.76187.538-121.30893.882-1.0091.6783.428-63.875-46.094159.372
12841A1A_A722A723:A849U850_1A1A0.018-1.4953.042.371-4.06141.846-1.6820.2083.161-5.664-3.30642.097
12851A1A_A723A724:A847A849_1A1A5.7120.194.255-13.14618.799-66.902-1.1324.2854.973-16.561-11.581-70.29
12861A1A_A724C725:G846A847_1A1A0.343-1.3283.127-4.482-7.459121.071-0.696-0.2373.165-4.2812.572121.258
12921A1A_A736G737:C819U820_1A1A0.314-1.4443.1751.76811.42828.545-4.721-0.2832.44422.067-3.41430.753
13011A1A_A765C766:G759G760_1A1A1.877-1.2053.017-1.8886.12665.785-1.327-1.792.8595.6261.73466.061
13051A1A_A769G770:C755U756_1A1A0.017-1.5593.5715.1887.5433.311-3.8460.8093.12212.855-8.84434.511
13101A1A_A774G775:U750G751_1A1A-1.1240.2962.625-2.38715.71745.074-0.6781.2332.63719.7893.00647.657
13161A1A_A782C783:G807A808_1A1A0.987-1.3083.132-1.8544.059.633-1.5-1.0783.0184.0161.86259.78
13321A1A_A824G825:C833U834_1A1A-0.384-2.0513.203-1.711-2.9228.015-3.5170.3843.412-6.0043.51728.214
13391A1A_A882G883:U988U869_1A1A2.968-1.0122.755-12.16713.13149.016-1.775-3.9611.71615.25114.13151.992
13441A1A_A888G889:C981U982_1A1A0.274-1.5523.158-1.75610.11827.117-5.073-0.892.41320.6623.58628.962
13491A1A_A896C897:G973G974_1A1A0.11-0.6163.679-3.06110.84865.271-1.05-0.2383.5429.982.81666.131
13611A1A_A908G909:C961G962_1A1A0.315-0.6413.505-3.042.60162.676-0.74-0.4483.4612.4982.9262.791
13631A1A_A910G911:C958U959_1A1A0.06-1.4963.3131.7078.81833.935-3.750.1462.84714.789-2.86335.07
13671A1A_A917U918:G952U953_1A1A1.241-1.5823.4070.3712.58733.062-3.217-2.1113.294.537-0.65133.163
13691A1A_A919G920:C950U951_1A1A0.002-1.3253.161-4.2679.68127.581-4.46-0.8232.53219.4248.56229.504
13901A1A_A1018U1233:A866A867_1A1A2.063-2.8280.561121.714126.708-0.3340.9931.4380.613-64.90162.343-175.696
14171A1A_A1074A1075:G1171A1172_1A1A-1.731.5273.275-8.051-11.003-62.527-0.962-1.9893.25510.468-7.659-63.849
14181A1A_A1075G1076:C1170G1171_1A1A1.524-0.6053.793-3.7813.78460.631-1.303-1.6733.50513.4533.68962.137
14211A1A_A1078G1080:C1167G1168_1A1A-1.338-3.1993.513-0.3913.12239.03-5.1621.9483.274.6640.58339.151
14321A1A_A1094A1096:C1155G1156_1A1A-0.026-1.6284.806-24.69421.33367.75-2.307-1.0894.0318.11420.96774.345
14411A1A_A1100G1101:C1150U1151_1A1A0.849-1.133.4994.78510.58338.362-2.916-0.6683.1715.672-7.08640.019
14511A1A_A1188G1190:C1064U1065_1A1A-1.987-3.328-0.34990.659-142.93615.257-1.1761.3121.684-75.398-47.822169.357
14561A1A_A1194G1195:C1059U1060_1A1A0.615-2.3073.1664.0529.69926.008-6.735-0.4482.24520.515-8.5728.018
14631A1A_A1201G1203:C1044U1045_1A1A2.078-2.8012.997-6.442-5.46868.724-2.284-2.0463.005-4.8255.68569.178
13921A1A_A1234G1235:C864G865_1A1A1.213-1.293.330.3058.46457.436-1.778-1.2353.1338.755-0.31558.004
13971A1A_A1239G1240:C859U860_1A1A0.592-2.0553.1862.9325.3125.714-5.802-0.5772.76211.725-6.47426.408
14071A1A_A1249G1251:U1286A1287_1A1A-0.5645.961-0.323-84.399-140.167105.1972.4890.586-3.163-71.51243.06170.069
14791A1A_A1258A1259:G1281G1282_1A1A-0.3760.1382.887-9.1796.80531.245-0.79-0.7352.84912.13716.37233.22
14801A1A_A1259G1260:U1280G1281_1A1A0.051-0.943.366-7.6785.67853.659-1.378-0.5293.2246.2358.4354.44
12381A1A_A1300G1302:C607G608_1A1A1.562-0.8273.81-7.46218.21152.131-2.063-2.1593.14919.9338.16855.479
12451A1A_A1308U1309:U2038U2039_1A1A-0.347-0.983.5320.15312.85449.797-2.0560.4113.20314.979-0.17951.327
14891A1A_A1314A1315:U2033G2034_1A1A0.198-0.9063.204-5.8834.2155.046-1.211-0.5443.0984.5336.33555.482
14901A1A_A1315C1316:G2032U2033_1A1A-0.569-1.4563.3570.4938.86634.45-3.6431.0012.89714.669-0.81535.542
14961A1A_A1332C1335:G1327U1328_1A1A1.417-1.8512.9042.2061.93384.258-1.419-1.012.8991.44-1.64484.299
15131A1A_A1347G1349:C1671G1672_1A1A-3.602-0.078-0.41473.088-151.726-73.070.161-1.7490.9577.96937.558-170.695
15171A1A_A1354G1355:C1651A1654_1A1A4.211-2.6062.49324.85520.744-19.1512.688.2-0.047-38.56446.207-37.484
15241A1A_A1363C1364:G1380U1381_1A1A0.115-1.4893.1621.4579.40231.211-4.1320.0242.61716.987-2.63232.595
15281A1A_A1388C1391:G1647U1648_1A1A1.378-1.02.831-7.2726.21878.008-0.934-1.2582.6424.9235.75778.5
15351A1A_A1400G1401:C1422G1423_1A1A1.237-0.2033.852-6.80111.53262.528-0.773-1.5133.63110.9766.47363.803
15401A1A_A1405A1406:G1417U1418_1A1A-3.719-0.2843.962-102.651-132.383-90.1530.96-2.4991.05167.625-52.436-171.195
15411A1A_A1406G1407:C1416G1417_1A1A0.901-0.7763.72-2.41512.47661.803-1.364-0.9833.48812.0112.32562.969
15451A1A_A1441C1444:G1435U1436_1A1A2.005-1.673.158-1.01-3.90180.728-1.19-1.5723.201-3.010.77980.812
15601A1A_A1458G1459:C1635U1636_1A1A-0.066-1.2272.968-4.3876.98832.65-3.114-0.5092.64312.1897.65133.649
15661A1A_A1465G1467:C1624U1625_1A1A2.612-1.0573.242-7.2570.14563.881-1.0-2.7512.9590.1366.83564.249
15731A1A_A1473C1474:A1617A1618_1A1A-1.8483.367-2.285-95.011-147.237-57.185-2.128-0.6390.5174.663-48.18-175.813
15971A1A_A1500C2715:G1503A1504_1A1A0.974-5.1562.312-2.7363.089114.642-3.085-0.5992.2081.8351.625114.69
16231A1A_A1532G1533:C1548U1549_1A1A-0.601-1.4423.4494.93510.85932.381-4.081.7632.72118.699-8.49834.453
16151A1A_A1574A1575:G1588A1589_1A1A-0.512-0.7883.0513.581.342115.18-0.480.3393.0340.795-2.12115.22
16161A1A_A1575G1576:U1587G1588_1A1A0.4750.034.209-9.98920.42162.417-1.039-0.9573.94619.0489.31866.033
15871A1A_A1600G1602:C1483U1484_1A1A2.712-1.973.198-3.538-3.41681.236-1.426-2.1683.165-2.6212.71581.359
15911A1A_A1605G1607:U1479A1480_1A1A-4.3011.3184.145-121.373-116.701-61.8580.205-3.060.26560.303-62.717-170.034
15941A1A_A1609G1610:C1476U1477_1A1A0.262-1.2113.1990.9585.30629.641-3.358-0.322.94910.265-1.85230.116
16291A1A_A1702C1703:G2026A2027_1A1A0.415-1.0413.232-2.2387.28164.13-1.275-0.483.0966.8322.164.533
16371A1A_A1711A1712:U2017C2018_1A1A0.357-0.8142.883-5.886-3.782123.506-0.433-0.2482.886-2.1463.339123.62
16381A1A_A1712G1713:C2016U2017_1A1A1.259-1.9483.6254.20511.09924.863-6.868-1.5982.69824.103-9.13127.51
16401A1A_A1716U2013:A1715U2015_1A1A0.237-3.526-3.217-167.904-39.846-21.21.3461.892-1.16620.623-86.902-172.694
16471A1A_A1736A1737:G1744A1745_1A1A-0.401-2.5523.2122.698-8.391111.88-1.4410.2733.327-5.06-1.627112.109
16481A1A_A1737C1738:G1743G1744_1A1A1.318-0.893.270.83812.19562.96-1.356-1.2083.08511.561-0.79464.016
16501A1A_A1770G1771:U1765G1766_1A1A-0.842-0.1332.834-3.8014.56255.501-0.3720.7082.8634.8834.06855.793
16601A1A_A1780G1781:C1755U1756_1A1A0.909-2.0593.4592.0778.90225.833-6.482-1.4232.67719.164-4.47227.377
16711A1A_A1804A1860:U1740A1999_1A1A3.774-0.249-0.995115.225124.674107.435-0.077-1.9340.60163.063-58.283173.949
16791A1A_A1814G2600:C2618G2619_1A1A-1.575-4.423.2064.11220.107-44.283.377-1.5064.801-25.1385.141-48.587
16871A1A_A1822G1823:C1858G1859_1A1A0.46-0.2964.744-19.41128.54359.432-1.843-1.4843.97826.52518.03867.928
16961A1A_A1833A1834:G1845A1846_1A1A-0.1790.1083.073-4.2144.937118.9510.0170.0653.0782.8652.445119.059
16971A1A_A1834C1835:G1844G1845_1A1A-0.046-0.5993.986-12.9921.25163.162-1.533-0.5663.619.50911.92567.42
16721A1A_A1860C1861:G1997U1740_1A1A5.579-1.0183.945-0.9775.71381.359-0.952-4.3023.8244.3770.74881.529
17151A1A_A1885G1886:C1909G1910_1A1A0.602-1.2333.767-4.02110.08557.741-1.843-0.8483.48110.3434.12458.666
17201A1A_A1890G1891:C1904G1905_1A1A1.284-1.0743.1290.4771.93655.92-1.25-1.3433.1032.064-0.50955.952
17011A1A_A1912G1913:U1882C1883_1A1A0.394-0.9023.353-10.46910.48855.781-1.501-0.9723.04110.99510.97557.563
17101A1A_A1923C1924:G1871U1872_1A1A-0.329-2.1063.3380.1431.53541.086-3.1660.4843.262.186-0.20441.114
17271A1A_A19414OC1942:G1932PSU1933_1A1A2.15-2.4713.915-13.237-1.12955.517-2.52-3.0853.409-1.19313.98856.961
12361A1A_A2041A2042:U2056G2057_1A1A0.529-2.0362.561-8.93314.64221.543-6.356-2.3750.77333.20920.2627.474
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132062a2a_U1351C1352:G1370G1371_2a2a0.288-2.0252.8938.784.42930.483-4.3580.8352.5648.161-16.17931.994
132262a2a_U1414G1415:U1485G1486_2a2a-0.341-2.1483.335-4.64814.3221.991-7.839-0.2881.68233.0210.71826.598
132372a2a_U1425C1426:G1474G1475_2a2a-0.238-2.4143.1712.4242.78318.825-8.5331.8352.7368.403-7.3219.18
132392a2a_U1427A1428:U1472A1473_2a2a0.088-1.2963.613-7.24416.31233.488-4.143-1.0872.65226.13211.60537.827
132472a2a_U1436C1437:G1464C1465_2a2a2.234-1.443.4140.1287.63537.443-3.167-3.3993.0811.744-0.19638.186
132142a2a_U1495C1496:G1405U1406_2a2a0.818-2.1183.233-2.3819.6920.357-8.321-2.8021.92825.536.27322.648
132582a2a_U1510G1511:C1524G1525_2a2a-0.691-0.7842.992-1.26718.43823.973-4.6771.1091.94337.9852.61130.187
132602a2a_U1512A1513:U1522G1523_2a2a0.43-1.92.7161.35813.8224.264-6.198-0.671.46129.947-2.94327.905

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.