A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5W4K  PDB ID: 5W4K 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18121A_4OC1942:G1932_1A0.152-0.0820.004-8.8045.933.129
18211A_5MC1964:U1962_1A-5.3630.581-0.71619.142-19.60640.449
111A_A6:U2906_1A2.1690.268-0.475-6.475-0.682-1.694
131A_A8:U2904_1A0.6270.1520.134-8.041-9.6190.924
1121A_A21:U544_1A-0.066-0.217-0.144-5.823-11.907-3.726
1181A_A28:G537_1A-6.451-4.41.338-21.759-0.2438.936
1281A_A38:U467_1A-0.114-0.1040.2821.9-21.0225.236
1331A_A43:U461_1A-0.8110.208-0.706-45.377-5.627-5.446
1671A_A48:U118_1A0.106-3.2960.523-11.4645.10362.276
1541A_A63:U89_1A3.1613.436-0.706-9.184-6.178-116.943
1781A_A77:U106_1A0.0660.0590.2667.258-4.162-1.214
1991A_A83:G100_1A-6.203-4.334-0.162-12.22842.983-1.866
1661A_A116:G50_1A-6.165-4.5060.548-23.35829.9215.157
1651A_A117:A51_1A-5.8055.307-0.078-28.464.247-168.147
1431A_A179:U195_1A-4.294-2.003-0.381-3.448-5.918-101.243
1441A_A180:A193_1A5.963-5.019-0.1828.8726.387174.662
11141A_A188:U2443_1A-5.3460.541-2.1380.435-22.82213.659
11151A_A205:U458_1A-4.129-2.174-0.626-1.754-12.098-94.939
11351A_A210:U454_1A-4.457-2.338-0.26932.942-2.036-89.701
11161A_A211:G221_1A-6.538-4.3770.45-30.634-2.8380.528
11181A_A214:U219_1A0.432-0.1850.3396.127-8.1612.812
11331A_A222:A456_1A-1.431-1.274-0.6872.908-2.912175.576
11201A_A240:G236_1A-6.998-5.0940.797-10.3736.61-11.756
11241A_A244:U232_1A-4.106-1.567-0.647-7.59-19.326-106.51
11251A_A245:A230_1A5.96-5.1230.15718.391-3.86172.373
11261A_A246:G229_1A-6.761-4.433-0.2394.965-15.783-1.315
11311A_A251:U224_1A0.068-0.3450.1-16.162-9.018-4.216
11401A_A259:U285_1A-4.31-2.021-0.171-16.7220.283-98.706
11411A_A260:G284_1A-6.902-4.376-0.54526.883-0.378-0.358
11891A_A346:U363_1A3.2310.503-1.054-17.01718.86687.085
12051A_A348:G362_1A-6.951-4.2370.207-2.246-8.594-9.221
1801A_A370:A318_1A-4.4280.1722.466-3.028-1.161-52.454
1811A_A371:U317_1A-0.2740.067-0.1952.666-10.3613.922
1901A_A381:U308_1A-0.469-0.0420.518-8.418-2.082-1.586
1921A_A383:G305_1A-6.721-4.056-0.234-2.211-6.1440.813
11521A_A388:U296_1A0.529-0.431-0.526-2.5638.738-7.145
12201A_A401:G427_1A-6.829-4.2330.0925.593-9.849-7.612
12211A_A428:U400_1A-4.44-2.066-0.525-9.669-14.189-99.985
12221A_A429:A450_1A-1.77-1.123-0.69250.584-10.655165.238
11701A_A439:A2423_1A-6.321-4.1780.1284.745-14.73-20.959
11671A_A442:U2420_1A-0.095-0.2280.27911.821-11.96-1.44
1241A_A480:A475_1A-4.1921.0721.199-12.95911.421-105.623
12231A_A483:A497_1A6.153-5.149-0.01222.5770.048177.756
12251A_A486:G495_1A-6.607-4.2870.0313.231-5.435-4.492
12281A_A517:G514_1A-6.89-4.8810.487-29.97911.032-8.033
12331A_A522:A508_1A-6.406-0.677-0.317-9.218-24.454.336
12011A_A526:A503_1A6.191-4.893-0.72830.086-22.204176.977
12031A_A528:A505_1A-1.525-1.421-0.043-16.456-6.078174.878
12021A_A530:A506_1A1.4640.8170.12427.981-3.524-177.205
12351A_A554:U2063_1A-3.635-1.595-0.37410.201-19.053-79.542
12461A_A561:U580_1A0.303-0.2840.039-3.714-4.007-3.114
12551A_A598:U589_1A0.192-0.1890.67714.566-23.682-0.833
12581A_A601:G586_1A0.2241.367-0.3829.134-8.103-13.546
12831A_A613:U714_1A-0.289-0.2280.0747.093-11.9310.81
12951A_A626:G650_1A2.2887.201-1.61947.465-3.357147.89
13001A_A632:G644_1A-6.795-4.210.18110.2-19.297-3.936
13071A_A662:G676_1A2.5817.108-1.55949.0422.434152.655
13171A_A722:U850_1A-4.008-2.102-0.9492.839-18.07-100.0
13181A_A723:A849_1A-3.9791.673-0.74212.156-25.908-110.223
13191A_A724:A847_1A-1.637-1.254-0.7839.067-2.133165.875
13281A_A736:U820_1A0.012-0.1450.30110.502-5.517-5.912
13381A_A765:G760_1A-7.579-5.050.4280.2290.432-22.631
13421A_A769:U756_1A-0.034-0.2620.5785.981-6.6343.864
13471A_A774:G751_1A-6.474-4.3861.337-19.93-2.0536.436
13531A_A782:A808_1A-6.369-4.218-0.0211.346-16.757-28.525
13631A_A793:G795_1A4.1116.671.627-14.32817.066161.834
13701A_A799:U2621_1A-0.290.076-0.288-21.52215.9112.947
13721A_A824:U834_1A-0.0750.008-0.22-7.7194.6575.108
13801A_A882:U869_1A0.1350.05-0.5751.132-10.0651.074
13861A_A888:U982_1A0.263-0.253-0.1283.513-11.861-2.495
13921A_A896:G974_1A-6.871-4.4950.2416.833-11.96-5.798
14041A_A908:G962_1A-6.797-4.429-0.297-1.625-12.06-4.787
14061A_A910:U959_1A0.204-0.042-0.006-1.414-0.59-0.576
14101A_A917:U953_1A0.056-0.151-0.276-3.839-7.8148.445
14121A_A919:U951_1A-0.3-0.344-0.696-11.99-17.76510.364
14341A_A1018:A867_1A-5.9255.3720.209-15.52915.403-170.208
14641A_A1074:A1172_1A-6.014.94-0.515-24.8975.606-178.584
14651A_A1075:G1171_1A-6.822-4.5540.4016.534-22.867-12.914
14681A_A1078:G1168_1A0.0231.404-0.445-7.0290.103-17.412
14801A_A1094:G1156_1A-7.699-4.9350.2-16.914-18.833-47.224
14811A_A1096:C1155_1A-5.861-2.1041.7016.79323.868-0.085
14921A_A1100:U1151_1A-0.76-0.3030.089-5.459-16.268-9.248
15031A_A1188:U1065_1A0.121.037-0.31813.69-18.391172.578
15081A_A1194:U1060_1A0.222-0.2050.012-8.55-6.3654.34
15151A_A1201:U1045_1A-4.195-2.271-0.8274.849-15.219-93.804
14361A_A1234:G865_1A-7.093-4.3650.271-3.223-1.729-10.767
14411A_A1239:U860_1A-0.065-0.0930.31-2.14-6.2987.29
14511A_A1249:A1287_1A-5.8785.122-0.139-9.78612.765-171.909
15321A_A1258:G1282_1A-6.69-5.1980.472-25.0036.997-8.524
15331A_A1259:G1281_1A-6.774-4.087-0.435.405-4.528-0.227
12641A_A1300:G608_1A-6.543-4.0620.64416.698-24.621-7.646
12711A_A1308:U2039_1A-0.152-0.0650.063-5.913-12.7186.553
15431A_A1314:G2034_1A-6.783-3.856-0.1761.213-1.966-8.593
15441A_A1315:U2033_1A-0.36-0.2860.1212.73-12.0281.622
15521A_A1332:U1328_1A-4.291-2.3160.473-2.27911.352-89.288
15711A_A1347:G1672_1A1.6317.0941.277-8.009-1.646132.449
15761A_A1354:A1654_1A1.5581.3880.16633.49733.624-173.139
15841A_A1363:U1381_1A-0.062-0.0380.0745.961-8.0412.926
15891A_A1388:U1648_1A-3.953-1.68-0.06-15.2757.534-99.31
15971A_A1400:G1423_1A-6.537-4.40.13113.485-33.538-7.528
16021A_A1405:U1418_1A-0.759-1.0550.541-0.656-5.764-178.721
16031A_A1406:G1417_1A-6.92-4.3660.1677.819-12.466-1.839
16081A_A1441:U1436_1A-4.134-2.4540.1078.386-3.842-88.866
16231A_A1458:U1636_1A0.002-0.2110.109-4.398-22.8097.883
16301A_A1465:U1625_1A-3.853-2.545-0.5275.85-16.121-92.047
16371A_A1473:A1618_1A-5.7475.2960.166-7.501-1.249-170.405
16631A_A1500:A1504_1A-5.6222.6331.0151.388-9.259-154.788
16911A_A1532:U1549_1A0.143-0.227-0.178-11.35-5.4032.395
16821A_A1574:A1589_1A5.56-5.1230.59119.2813.645172.707
16831A_A1575:G1588_1A-6.585-4.660.69715.693-34.163-3.439
16521A_A1600:U1484_1A-4.382-2.235-0.5172.884-11.944-96.345
16971A_A1601:A1681_1A4.2911.1760.54714.2411.026-106.831
16561A_A1605:A1480_1A1.3771.588-0.091-21.43419.53-170.339
16591A_A1609:U1477_1A0.255-0.0480.167-4.572-18.135-2.153
17001A_A1702:A2027_1A-6.258-4.2690.033-3.0841.407-13.161
17091A_A1711:C2018_1A-0.025-1.41-0.52721.968-7.991163.979
17101A_A1712:U2017_1A0.229-0.0540.3168.472-1.732-0.838
17121A_A1716:U2015_1A-0.068-0.169-0.383-13.7361.227-0.072
17211A_A1736:A1745_1A5.989-5.214-0.4597.915-11.672177.831
17221A_A1737:G1744_1A-7.004-4.7150.3685.251-6.383-16.493
17251A_A1770:G1766_1A-6.966-4.3530.493-12.0261.88.741
17351A_A1780:U1756_1A0.23-0.299-0.385-7.678-13.0033.287
17491A_A1804:A1999_1A2.841-3.6780.2518.43113.106-84.649
17581A_A1814:G2619_1A2.1567.7970.612-4.633-14.4160.783
17671A_A1822:G1859_1A-6.105-3.975-0.25435.242-34.1215.741
17771A_A1833:A1846_1A6.006-5.2720.69321.8611.298168.47
17781A_A1834:G1845_1A-6.612-4.1210.12715.609-19.7543.285
17501A_A1860:U1740_1A-0.0680.0450.42422.912-6.141-3.076
17981A_A1885:G1910_1A-7.335-4.13-0.0167.903-5.456-9.288
18031A_A1890:G1905_1A-6.838-4.4290.061-6.305-11.073-5.841
17831A_A1912:C1883_1A-6.605-4.3510.1971.788-22.227-13.798
17921A_A1923:U1872_1A0.418-0.052-0.226-13.022-13.733.54
18111A_A1941:PSU1933_1A-5.071-2.155-1.7924.0970.846-37.72
17971A_A1954:G1990_1A-6.838-4.2330.0261.264-3.58-4.073
12601A_A2041:G2057_1A-0.311.572-0.044-10.468-6.841-15.069
12611A_A2042:U2056_1A0.504-0.1230.55620.479-11.026-4.819
12541A_A2052:A590_1A-3.2461.5-1.5141.993-16.507-11.474
12411A_A2055:U585_1A0.056-0.0920.6068.29617.013-4.037
18491A_A2079:U2623_1A0.344-0.1750.152-13.6645.3093.626
18501A_A2084:2MA2515_1A5.881-5.1180.702-18.96519.853175.46
19031A_A2139:U2194_1A0.7660.0041.35216.228-15.223-4.805
19051A_A2141:A2136_1A-3.7811.3261.309-12.533.297-104.373
19081A_A2148:G2184_1A2.4446.441-2.39448.9719.619150.313
19131A_A2156:G2179_1A-6.518-4.633-1.887-13.7298.224-15.81
19061A_A2192:U2135_1A-1.7695.639-0.263-23.414-1.701-165.178
19231A_A2195:G2147_1A-6.529-4.1-0.3243.717-4.933-3.548
19261A_A2198:U2144_1A1.017-0.0810.119-2.447-11.021-3.753
19471A_A2221:G2236_1A-7.178-4.404-0.0224.249-4.753-7.349
18521A_A2239:U2114_1A3.89-6.1230.10318.5842.998161.927
18651A_A2253:U2101_1A-0.241-0.0550.399-4.287-14.8587.297
19541A_A2259:U2269_1A-0.484-0.0990.3443.04-16.5973.957
14021A_A2280:A964_1A6.306-5.19-0.37314.111-7.466172.007
19601A_A2285:A2278_1A5.913-5.391-0.37634.626-24.988174.123
19611A_A2286:U2277_1A-6.838-2.141-0.676-15.947-8.138-8.674
19641A_A2290:U2274_1A-0.129-0.179-0.419-12.318-7.68-1.675
19741A_A2299:U2356_1A0.1680.928-0.20611.955-10.185166.863
19831A_A2310:G2330_1A-7.022-4.478-0.2620.905-20.416-2.371
19911A_A2334:A2347_1A1.4171.2920.26225.4439.545-177.678
19971A_A2373:C2368_1A-5.406-1.467-0.961-3.331-0.597.752
110021A_A2378:G2363_1A-6.76-4.480.5794.374-2.32-7.099
110051A_A2381:U2360_1A0.209-0.0790.1120.078-10.0532.557
11821A_A2434:A2405_1A4.0451.21-0.5540.42-11.467-99.755
18681A_A2447:U2096_1A0.031-0.0860.5343.039-7.8557.457
18781A_A2462:C2513_1A-2.961-0.436-0.9480.051-29.386-92.252
18791A_A2463:G2083_1A0.3651.845-0.873-34.52423.203-30.733
18811A_A2465:U2512_1A0.245-0.150.2692.027.177-0.098
18871A_A2471:U2505_1A0.4850.0610.43417.042-1.9790.793
18971A_A2481:G2493_1A-6.301-4.2540.727-29.5617.9554.317
110711A_A2543:A2674_1A1.5421.5910.03810.39721.324-179.191
110201A_A2553:A2778_1A6.21-0.694-0.202-8.006-0.06351.708
18351A_A2578:U2574_1A4.238-2.3060.632-5.858-10.41790.624
17571A_A2599:G2620_1A-6.827-4.7720.20613.9174.423-8.886
17601A_A2601:PSU2617_1A0.2940.5250.0754.497-21.04225.42
17611A_A2602:U2616_1A-0.174-0.027-0.3081.139-11.5460.061
18421A_A2633:U2069_1A0.033-0.0490.097-2.033-11.9-3.026
110691A_A2669:G2676_1A-6.939-4.1390.165-1.16-4.03-2.081
110411A_A2723:U2708_1A0.1140.0380.27815.566-10.9197.32
110491A_A2734:U2700_1A-7.008-4.5760.544-4.936-15.215-4.864
110531A_A2738:U2696_1A-0.211-0.2660.34613.425-16.768-1.388
110891A_A2747:G2783_1A-6.726-4.4390.52410.273-13.243-3.817
110931A_A2751:G2779_1A0.3881.582-0.223-23.162-7.227-17.354
110951A_A2754:G2776_1A-6.739-4.2390.3187.085-14.996-4.946
111021A_A2761:U2767_1A-4.118-1.55-0.1966.5760.541-108.849
111031A_A2762:A2766_1A-3.8061.29-0.38615.494-12.627-102.142
111041A_A2763:C2765_1A3.964-2.6310.689-36.4925.301-47.433
110781A_A2788:A2651_1A6.431-4.201-0.04611.318-10.044-14.711
110801A_A2789:U2649_1A-4.032-1.9110.6743.83513.137-98.459
110791A_A2791:G2650_1A-6.618-4.3530.429-23.74725.518-4.541
111111A_A2820:G2900_1A-6.904-4.6580.1038.295-30.281-7.8
111141A_A2823:U2897_1A-0.494-0.0950.186-0.939-15.204-0.037
111211A_A2831:A2836_1A6.425-0.663-0.145-16.7965.57254.87
111351A_A2861:U2876_1A3.73-5.8450.20636.439-15.78169.008
191A_C18:G547_1A0.302-0.3370.046-1.101-3.5290.776
1101A_C19:G546_1A0.171-0.114-0.1331.65-12.7851.787
1111A_C20:G545_1A0.032-0.045-0.093-2.912-10.7291.846
1131A_C22:G543_1A0.03-0.030.0994.087-5.6040.616
1211A_C31:G500_1A0.118-0.111-0.4214.94-10.2483.353
1221A_C32:G499_1A0.373-0.158-0.055.543-15.2313.854
1271A_C37:G468_1A0.598-0.2260.157-9.252-7.4272.637
1291A_C39:G466_1A-0.012-0.1290.0476.904-17.893-1.149
1301A_C40:G465_1A-0.169-0.3160.2161.913-10.136-0.834
1311A_C41:G464_1A0.0-0.177-0.12110.502-8.7435.48
1501A_C45:G168_1A0.303-0.366-0.1875.156-1.4222.483
1511A_C46:G167_1A0.304-0.408-0.7029.051-6.246-4.174
1531A_C61:G91_1A-0.059-0.080.501-9.26310.9878.811
1551A_C64:G88_1A0.154-0.0510.045.695-10.6754.326
1561A_C65:G87_1A0.191-0.257-0.1428.113-6.908-0.19
1591A_C68:G57_1A0.321-0.2380.3246.185-24.0571.141
1761A_C75:G108_1A0.211-0.089-0.3096.42-6.6941.018
1771A_C76:G107_1A0.451-0.065-0.068-0.134-10.515-1.209
11011A_C85:G95_1A0.753-0.2320.091-0.8012.0071.309
11021A_C86:G94_1A0.246-0.095-0.37215.31110.061.96
1621A_C113:G54_1A0.3270.089-0.1076.235-11.9945.47
1631A_C114:G53_1A0.127-0.002-0.1416.359-11.0131.517
11031A_C126:G121_1A0.161-0.21-0.10114.085-13.2170.744
11041A_C127:G120_1A0.106-0.225-0.0483.897-11.543-0.428
11051A_C128:G119_1A0.49-0.0740.017-1.0790.521.34
11081A_C131:G146_1A0.023-0.2660.0195.457-15.4153.028
11091A_C132:G145_1A-0.152-0.3370.2061.751-5.0740.161
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134382a_U960:U956_2a1.9283.502-0.35316.159.241177.141
134512a_U961:A1201_2a0.205-2.4390.253-4.018-15.484-142.885
134762a_U991:A1213_2a4.903-2.549-0.64724.861-19.87-88.326
134952a_U997:A1044_2a1.433-0.670.1368.054-16.918-2.33
134982a_U1000:A1041_2a1.025-0.402-0.2029.71-23.456-3.898
135102a_U1012:G1017_2a2.091-0.3880.067-2.4234.143-1.059
135032a_U1025:G1036_2a0.484-0.601-0.98426.62551.165-9.915
134822a_U1052:G1206_2a3.184-0.8890.742-0.2049.826-1.479
134842a_U1056:A1204_2a-0.118-0.234-0.801-10.404-7.5995.202
134902a_U1062:U1194_2a1.803-2.2522.163-5.314.0868.707
135162a_U1070:A1105_2a-0.038-0.086-0.418-0.875-6.9423.181
135192a_U1073:A1102_2a-0.111-0.034-0.19612.874-17.16-2.193
135242a_U1086:C1100_2a-3.81-1.821.2613.2873.51222.476
135282a_U1090:U1095_2a2.528-2.5811.27913.0840.5688.619
135372a_U1121:A1152_2a-0.069-0.042-0.2048.385-13.196-2.081
135382a_U1122:A1151_2a0.564-0.1980.616-9.2732.121.824
135472a_U1135:G1138_2a0.872-7.1350.279-9.509-2.623-109.402
134452a_U1232:A949_2a0.099-0.1290.2930.672-20.615-2.542
134482a_U1235:A946_2a-0.603-0.0350.422-9.118-13.47-6.101
135642a_U1247:G1290_2a2.489-0.5010.859-20.031-9.417-4.757
134632a_U1330:U1307_2a1.406-1.4080.181-0.867-17.58221.328
134322a_U1341:G942_2a2.392-0.66-1.1795.263-6.0941.886
134372a_U1345:U1376_2a-2.616-3.696-0.469-2.30417.02-175.174
135812a_U1351:G1371_2a1.401-0.4510.4061.154-5.408-1.874
135882a_U1358:A1363A_2a0.051-1.2640.46710.227.775-164.678
136032a_U1414:G1486_2a1.5250.253-0.29516.576-12.2875.686
136142a_U1425:G1475_2a1.924-0.3530.1681.038-9.543-2.429
136162a_U1427:A1473_2a-0.795-0.034-0.49517.266-10.8710.228
136242a_U1436:C1465_2a-0.768-0.085-0.30514.819-19.877-32.353
135902a_U1495:U1406_2a2.101-0.86-0.759-17.306-6.023-20.249
136362a_U1510:G1525_2a2.017-0.529-0.158-6.526-18.093-2.217
136382a_U1512:G1523_2a1.802-0.4290.416-3.229-11.155-0.012

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.