A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
Search for released structures

NDB ID: 5W1Z  PDB ID: 5W1Z 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18AA_BRU8DI9:DC12DA13_BB0.2341.7393.5711.177-5.10149.2032.482-0.1863.391-6.106-1.40949.464
13AA_DA3DI4:DC17BRU18_BB0.233-0.3173.111-4.5810.52930.634-0.69-1.2733.0390.9938.6130.971
11AA_DC1DC2:DI19DI20_BB0.128-0.0623.1325.1162.92531.985-0.6020.633.0975.252-9.18832.51
12AA_DC2DA3:BRU18DI19_BB-0.2141.5323.4831.073-5.0248.8592.2360.3423.315-6.05-1.29449.111
16AA_DC6DC7:DI14DI15_BB-0.168-0.2463.260.4380.33335.539-0.4520.3393.2560.545-0.71735.544
17AA_DC7BRU8:DA13DI14_BB-0.242-0.1163.1113.0280.8131.678-0.3520.9663.0711.48-5.52931.829
14AA_DI4DI5:DC16DC17_BB0.147-0.3173.2880.6480.93736.152-0.643-0.1453.2811.51-1.04336.169
15AA_DI5DC6:DI15DC16_BB-0.022-0.2483.271-0.5230.92938.429-0.492-0.0323.2651.4110.79538.443
19AA_DI9DI10:DC11DC12_BB0.0590.1283.093-5.3214.32233.343-0.435-0.9063.047.4349.15434.021
117CC_BRU8DI9:DC12DA13_DD-0.1112.2293.2310.317-7.15948.3453.2080.1572.893-8.685-0.38448.842
112CC_DA3DI4:DC17BRU18_DD-0.056-0.0273.136-2.9842.40226.943-0.635-0.5993.115.1226.36327.209
110CC_DC1DC2:DI19DI20_DD-0.081-0.0923.1974.6428.09332.18-1.460.8853.04414.231-8.16333.471
111CC_DC2DA3:BRU18DI19_DD-0.1432.3033.2460.66-10.33651.1453.260.2042.762-11.834-0.75652.114
115CC_DC6DC7:DI14DI15_DD-0.316-0.1893.2330.5813.72736.404-0.8050.5813.1935.945-0.92736.592
116CC_DC7BRU8:DA13DI14_DD0.6730.393.1293.9370.6731.1370.599-0.5263.1961.242-7.29631.386
113CC_DI4DI5:DC16DC17_DD0.327-0.1893.209-1.1012.96337.382-0.673-0.6493.1754.6121.71437.51
114CC_DI5DC6:DI15DC16_DD0.076-0.043.340.9960.58839.188-0.1310.0083.340.876-1.48539.204
118CC_DI9DI10:DC11DC12_DD0.3410.2983.181-4.3077.26533.203-0.612-1.2433.10812.4647.38934.231

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.