A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5W1Z  PDB ID: 5W1Z 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_BRU8:DA13_B0.049-0.185-0.123-1.345-9.5272.649
13A_DA3:BRU18_B0.094-0.148-0.0363.556-14.5484.679
11A_DC1:DI20_B0.18-0.223-0.0032.321-10.5846.253
12A_DC2:DI19_B0.318-0.198-0.19611.658-9.3228.961
16A_DC6:DI15_B0.309-0.2490.132-0.994-16.8959.073
17A_DC7:DI14_B0.208-0.2660.111-5.253-13.3617.152
14A_DI4:DC17_B-0.355-0.3760.3297.541-14.3276.344
15A_DI5:DC16_B-0.458-0.2430.1422.123-14.2077.179
19A_DI9:DC12_B-0.421-0.317-0.353-13.694-10.0366.21
110A_DI10:DC11_B-0.403-0.31-0.126-3.677-10.4172.136
118C_BRU8:DA13_D-0.267-0.210.052-4.137-4.4031.852
113C_DA3:BRU18_D0.154-0.1140.0565.754-10.8371.779
111C_DC1:DI20_D0.198-0.2510.11-0.966-17.2985.44
112C_DC2:DI19_D0.314-0.31-0.0183.675-10.3845.349
116C_DC6:DI15_D0.382-0.1270.136-3.852-16.87511.636
117C_DC7:DI14_D0.408-0.2150.157-10.075-16.4516.848
114C_DI4:DC17_D-0.382-0.2550.1498.486-17.6187.336
115C_DI5:DC16_D-0.428-0.1270.1911.937-17.93311.236
119C_DI9:DC12_D-0.421-0.2110.024-0.977-13.5167.721
120C_DI10:DC11_D-0.32-0.1760.2213.82-19.99510.778

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.