A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VZH  PDB ID: 5VZH 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15TT_DA7DC8:DG2DT3_PP-0.631-0.7343.498-3.126-0.45133.292-1.1960.5393.55-0.7855.4433.438
11TT_DC1DG2:DC3DG4_DD-0.2580.3613.0222.2658.6831.235-0.7810.8342.98715.718-4.10132.467
16TT_DC8DG9:DC1DG2_PP-0.742-1.2233.584-6.5049.67736.264-3.1940.2543.24515.07510.13238.032
12TT_DG2DG3:DC2DC3_DD0.551-0.2163.417-0.9242.0533.584-0.72-1.1083.3823.5431.59733.657
13TT_DG3DC4:DG1DC2_DD0.5120.123.0166.3462.75326.731-0.3820.3863.0515.832-13.44227.596
14TT_DT6DA7:DT3DA4_PP-0.5810.7992.8211.5624.751-71.963-0.814-0.4492.782-4.0391.328-72.114

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.