A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VZH  PDB ID: 5VZH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.431-0.0390.09818.701-2.6694.648
11T_DC1:DG4_D0.383-0.2670.445-14.352-12.093-6.925
14T_DC4:DG1_D0.3480.005-0.36817.561.6640.05
17T_DC8:DG2_P0.317-0.154-0.06416.758-16.3790.957
12T_DG2:DC3_D0.0160.040.5522.438-16.4610.736
13T_DG3:DC2_D-0.299-0.2480.2812.595-8.393-2.868
18T_DG9:DC1_P-0.299-0.1470.098-1.248-12.454-0.288
15T_DT6:DA4_P-0.072-1.058-0.145-16.0518.446-171.868

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.