A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VZE  PDB ID: 5VZE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15TT_DA7DC8:DG2DT3_PP-0.632-0.683.396-2.676-1.00334.036-0.9910.6323.453-1.714.56234.152
11TT_DC1DG2:DC3DG4_DD-0.2630.43.0890.7798.89531.294-0.7820.6013.07716.083-1.40832.512
16TT_DC8DG9:DC1DG2_PP-0.725-1.2023.642-6.87610.45836.551-3.2260.1743.26916.10610.58838.565
12TT_DG2DG3:DC2DC3_DD0.485-0.1833.516-0.7592.93834.289-0.799-0.9453.4774.9711.28434.419
13TT_DG3DC4:DG1DC2_DD0.3980.0893.0664.2322.66326.336-0.4610.1793.0845.778-9.18426.798
14TT_DT6DA7:DT3DA4_PP-0.7290.8362.922.1195.095-71.999-0.86-0.5562.881-4.3271.8-72.182

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.