A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5VZE  PDB ID: 5VZE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.385-0.1050.02917.148-2.0632.733
11T_DC1:DG4_D0.285-0.1810.29-10.686-13.199-6.185
14T_DC4:DG1_D0.223-0.071-0.22413.6022.693-0.676
17T_DC8:DG2_P0.272-0.078-0.18919.048-16.710.797
12T_DG2:DC3_D0.010.0480.3992.383-11.6911.055
13T_DG3:DC2_D-0.193-0.1610.147-0.067-8.359-2.241
18T_DG9:DC1_P-0.239-0.150.0940.295-11.102-0.643
15T_DT6:DA4_P-0.026-0.938-0.192-14.7617.788-170.678

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.