A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VXQ  PDB ID: 5VXQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A2:A12_B6.214-5.040.0312.926-3.954179.512
12A_A3:A13_B6.139-5.025-0.43310.616-1.029178.97
13A_A4:A14_B-6.2075.0120.042-2.9819.322-179.92
14A_A5:A15_B6.163-5.0310.106-0.427-10.637178.575
16A_A7:DA17_B-6.1585.0880.0655.813.229-176.506
17A_A8:A18_B-6.0245.156-0.0283.15414.234-179.813
18A_A9:A19_B6.07-5.064-0.051-5.363-15.295178.545
19A_A10:A20_B-6.175.0140.0046.84713.91-179.699
110A_A11:A21_B-6.1315.0280.1120.9534.544-179.152
15A_DA6:A16_B-6.1755.0480.072.82711.693-179.785

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.