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As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5VPF  PDB ID: 5VPF 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18EE_DA9DC10:DG10DT11_FF-0.92-0.773.197-0.9640.630.809-1.5631.5463.2081.1291.81330.829
112EE_DA13DC14:DG6DT7_FF0.151-0.4713.194-3.735.0728.022-2.048-1.1123.01910.3067.58228.706
116EE_DA17DC18:DG2DT3_FF1.184-0.1053.261-2.5865.09930.934-1.129-2.6593.0979.4584.79731.446
13EE_DC4DG5:DC15DG16_FF0.5210.5613.147-0.0396.07531.062-0.07-0.9643.19611.2090.07131.636
19EE_DC10DT11:DA9DG10_FF1.278-0.1623.2481.21.62437.936-0.455-1.8113.2762.495-1.84537.987
111EE_DC12DA13:DT7DG8_FF0.320.2063.4012.8894.02541.411-0.154-0.1313.4195.668-4.06841.694
113EE_DC14DC15:DG5DG6_FF0.172-0.1483.3261.9894.30236.261-0.8370.0053.2926.875-3.17936.559
114EE_DC15DG16:DC4DG5_FF-0.1530.7813.1650.7166.45431.050.2520.4113.25311.893-1.31931.705
117EE_DC18DG19:DC1DG2_FF-1.5061.3633.2393.2140.8934.8822.1342.9723.1251.48-5.34735.036
11EE_DG2DT3:DA17DC18_FF-0.9270.1032.9062.7343.00627.7-0.412.4852.7986.236-5.67227.991
14EE_DG5DG6:DC14DC15_FF-0.288-0.2573.556-1.2946.16236.525-1.30.2653.4769.7432.04737.046
15EE_DG6DT7:DA13DC14_FF-0.433-0.6713.0930.5563.75826.508-2.3551.0692.9618.143-1.20426.775
17EE_DG8DA9:DT11DC12_FF0.57-0.1633.4360.4555.27435.261-1.068-0.8623.3848.646-0.74735.644
115EE_DG16DA17:DT3DC4_FF-0.088-0.173.4650.013-0.61242.302-0.1690.1233.467-0.849-0.01842.306
12EE_DT3DC4:DG16DA17_FF0.437-0.0613.648-0.9290.10942.637-0.096-0.7053.6380.1511.27742.647
16EE_DT7DG8:DC12DA13_FF-0.6610.4953.238-5.0895.49938.5890.0730.373.3328.2277.61339.283
110EE_DT11DC12:DG8DA9_FF-0.585-0.2583.308-0.6783.63234.579-0.990.8743.2756.0891.13634.769
126GG_DA9DC10:DG10DT11_HH-0.869-0.9463.207-0.507-0.49329.823-1.7361.5843.235-0.9580.98529.831
130GG_DA13DC14:DG6DT7_HH0.112-0.5873.077-2.3833.65628.168-1.968-0.7332.9597.4554.85928.497
134GG_DA17DC18:DG2DT3_HH1.003-0.413.188-1.571.35231.849-0.983-2.0993.1172.4612.85831.915
118GG_DC1DG2:DC18DG19_HH0.113-0.5162.9070.893-1.71731.708-0.662-0.062.932-3.139-1.63331.766
121GG_DC4DG5:DC15DG16_HH-0.1610.8193.191.9275.73333.7750.4940.5733.2679.77-3.28334.297
127GG_DC10DT11:DA9DG10_HH1.193-0.3283.3981.6221.62437.098-0.741-1.6463.4292.55-2.54637.167
129GG_DC12DA13:DT7DG8_HH0.3030.2263.4032.8094.68240.981-0.205-0.1143.4196.651-3.9941.328
131GG_DC14DC15:DG5DG6_HH0.276-0.4373.3282.8035.67633.063-1.69-0.0143.2229.861-4.8733.647
132GG_DC15DG16:DC4DG5_HH0.0360.7243.2060.4188.40831.81-0.1720.0093.28515.014-0.74632.877
135GG_DC18DG19:DC1DG2_HH-1.1980.9123.3071.4940.51333.9891.4762.2873.2660.877-2.55434.024
119GG_DG2DT3:DA17DC18_HH-0.834-0.8153.166-2.6050.70724.057-2.1641.183.2111.696.22424.206
122GG_DG5DG6:DC14DC15_HH-0.126-0.3243.381-4.5922.47435.892-0.878-0.4623.3423.9887.40336.257
123GG_DG6DT7:DA13DC14_HH-0.354-0.7053.1622.9133.09127.694-2.1511.3863.0156.41-6.04128.012
125GG_DG8DA9:DT11DC12_HH0.348-0.3023.168-2.482.95836.503-0.868-0.8783.1054.7063.94636.699
133GG_DG16DA17:DT3DC4_HH-0.24-0.2153.464-0.558-1.40942.543-0.1450.2713.472-1.9410.76842.569
120GG_DT3DC4:DG16DA17_HH-0.072-0.1073.4220.2290.6241.052-0.2230.1283.420.885-0.32641.057
124GG_DT7DG8:DC12DA13_HH-0.3750.333.366-3.8625.53738.559-0.1990.0773.48.3065.79439.124
128GG_DT11DC12:DG8DA9_HH-0.488-0.2373.2750.4913.46635.877-0.8740.8583.2325.61-0.79536.041

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.