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As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5VPF  PDB ID: 5VPF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18E_DA9:DT11_F0.454-0.060.2813.484-12.6823.907
112E_DA13:DT7_F-0.282-0.1990.124-7.299-13.1131.185
116E_DA17:DT3_F0.179-0.133-0.076-5.657-13.115-1.77
13E_DC4:DG16_F0.176-0.308-0.021-6.17-18.404-0.347
19E_DC10:DG10_F-0.711-0.2850.0241.636-10.528-5.279
111E_DC12:DG8_F0.185-0.3410.1081.936-12.612-0.008
113E_DC14:DG6_F0.031-0.0130.511-4.058-7.563.072
114E_DC15:DG5_F0.125-0.1620.392-6.988-6.973-0.592
117E_DC18:DG2_F0.739-0.0770.233-1.3617.4187.175
11E_DG2:DC18_F0.012-0.0740.063-7.53-6.853-0.369
14E_DG5:DC15_F-0.378-0.1130.2175.056-4.960.322
15E_DG6:DC14_F-0.157-0.060.143-2.114-9.572.218
17E_DG8:DC12_F-0.103-0.1210.3355.05-9.676-2.4
115E_DG16:DC4_F-0.38-0.2930.1345.427-19.8021.433
118E_DG19:DC1_F-0.069-0.048-0.0458.832-19.973-1.596
12E_DT3:DA17_F-0.564-0.057-0.4267.905-14.962-6.462
16E_DT7:DA13_F-0.023-0.050.0735.588-8.731-1.228
110E_DT11:DA9_F-0.109-0.1310.0022.56-16.5886.791
127G_DA9:DT11_H0.5910.0050.4852.958-12.6152.86
131G_DA13:DT7_H0.074-0.2590.064-9.417-13.604-0.198
135G_DA17:DT3_H0.285-0.1750.03-5.561-15.0-3.33
119G_DC1:DG19_H0.0120.3060.475-24.7265.2341.759
122G_DC4:DG16_H0.259-0.140.272-6.149-17.3313.293
128G_DC10:DG10_H-0.503-0.2580.1692.028-10.086-4.582
130G_DC12:DG8_H0.342-0.2890.171-1.036-7.978-1.149
132G_DC14:DG6_H0.289-0.0990.415-1.688-7.7140.543
133G_DC15:DG5_H-0.062-0.1090.237-5.414-4.777-1.771
136G_DC18:DG2_H0.686-0.1820.2370.4611.2291.62
120G_DG2:DC18_H-0.023-0.333-0.008-3.352-3.591-3.026
123G_DG5:DC15_H0.286-0.1530.0235.51-9.348-3.342
124G_DG6:DC14_H0.2530.060.4220.658-11.3371.88
126G_DG8:DC12_H0.034-0.0660.1550.689-12.225-0.976
134G_DG16:DC4_H-0.376-0.2870.0065.504-16.2122.119
137G_DG19:DC1_H-0.051-0.1420.1779.187-22.314-7.298
121G_DT3:DA17_H-0.792-0.1140.2641.013-10.5423.21
125G_DT7:DA13_H0.49-0.0940.0516.664-10.045-3.269
129G_DT11:DA9_H-0.169-0.0740.282-3.156-10.5775.553

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.