A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VPF  PDB ID: 5VPF 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
18E_DA9:DT11_F120
112E_DA13:DT7_F120
116E_DA17:DT3_F120
13E_DC4:DG16_F119
19E_DC10:DG10_F119
111E_DC12:DG8_F119
113E_DC14:DG6_F119
114E_DC15:DG5_F119
117E_DC18:DG2_F119
11E_DG2:DC18_F119
14E_DG5:DC15_F119
15E_DG6:DC14_F119
17E_DG8:DC12_F119
115E_DG16:DC4_F119
118E_DG19:DC1_F119
12E_DT3:DA17_F120
16E_DT7:DA13_F120
110E_DT11:DA9_F120
127G_DA9:DT11_H120
131G_DA13:DT7_H120
135G_DA17:DT3_H120
119G_DC1:DG19_H119
122G_DC4:DG16_H119
128G_DC10:DG10_H119
130G_DC12:DG8_H119
132G_DC14:DG6_H119
133G_DC15:DG5_H119
136G_DC18:DG2_H119
120G_DG2:DC18_H119
123G_DG5:DC15_H119
124G_DG6:DC14_H119
126G_DG8:DC12_H119
134G_DG16:DC4_H119
137G_DG19:DC1_H119
121G_DT3:DA17_H120
125G_DT7:DA13_H120
129G_DT11:DA9_H120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)