A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VPE  PDB ID: 5VPE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18GG_DA9DC10:DG10DT11_HH-0.841-0.7353.215-0.5190.81133.149-1.4211.3873.2091.4220.90933.163
112GG_DA13DC14:DG6DT7_HH0.092-0.4073.168-2.8623.80928.461-1.63-0.7963.0657.685.77128.849
116GG_DA17DC18:DG2DT3_HH0.545-0.253.160.2313.48128.537-1.255-1.0473.1137.029-0.46628.746
13GG_DC4DG5:DC15DG16_HH0.2020.7353.2830.474.65634.9860.511-0.2623.3537.702-0.77835.288
19GG_DC10DT11:DA9DG10_HH1.246-0.3023.3211.3751.88437.564-0.718-1.7493.3442.923-2.13337.634
111GG_DC12DA13:DT7DG8_HH0.3590.3523.3461.5568.22640.174-0.427-0.3363.36211.82-2.23541.002
113GG_DC14DC15:DG5DG6_HH0.3290.0433.3273.0333.92734.691-0.532-0.0813.3286.544-5.05535.033
114GG_DC15DG16:DC4DG5_HH0.0610.6653.2990.5776.88533.7930.021-0.0113.36611.692-0.98134.472
117GG_DC18DG19:DC1DG2_HH-0.8191.2393.244-0.52-0.98335.382.181.2713.221-1.6180.85535.397
11GG_DG2DT3:DA17DC18_HH-0.9670.4933.282-1.7732.07233.7770.5081.373.353.5583.04533.884
14GG_DG5DG6:DC14DC15_HH-0.569-0.0813.379-3.953.15835.463-0.6040.3343.4015.1536.44535.811
15GG_DG6DT7:DA13DC14_HH-0.346-0.6613.131.4792.52228.134-1.9051.0333.0395.171-3.03328.283
17GG_DG8DA9:DT11DC12_HH0.607-0.1813.192-2.4513.64334.425-0.844-1.3823.1086.1254.1234.695
115GG_DG16DA17:DT3DC4_HH-0.339-0.1233.411-1.502-1.20541.461-0.040.3113.423-1.7012.1241.504
12GG_DT3DC4:DG16DA17_HH0.62-0.0553.41.8010.01538.975-0.084-0.7013.4240.022-2.69839.015
16GG_DT7DG8:DC12DA13_HH-0.5480.4073.387-3.8365.92638.606-0.1390.3343.4468.8735.74339.222
110GG_DT11DC12:DG8DA9_HH-0.5770.0563.2423.185.89334.878-0.7581.4063.1479.72-5.24535.495
125EE_DA9DC10:DG10DT11_FF-0.926-0.5343.162-1.24-0.51432.8-0.8581.4313.202-0.912.19532.827
129EE_DA13DC14:DG6DT7_FF-0.025-0.4313.123-2.5592.29126.945-1.466-0.5583.0664.8925.46427.159
133EE_DA17DC18:DG2DT3_FF0.56-0.3763.157-0.1272.21329.195-1.204-1.1343.1184.3820.25229.277
120EE_DC4DG5:DC15DG16_FF0.0440.7843.213-1.7838.8334.681-0.011-0.3313.30114.5112.9335.797
126EE_DC10DT11:DA9DG10_FF1.246-0.3693.3490.8243.31837.566-1.011-1.8183.3315.14-1.27637.715
128EE_DC12DA13:DT7DG8_FF0.3540.0953.4070.9017.52441.668-0.673-0.3943.3810.473-1.25442.321
130EE_DC14DC15:DG5DG6_FF0.333-0.053.2053.9983.94634.963-0.6540.0323.1976.516-6.60235.397
131EE_DC15DG16:DC4DG5_FF0.1160.7283.182-0.8747.14733.4510.113-0.3353.2612.2411.49734.196
134EE_DC18DG19:DC1DG2_FF-0.3440.7853.3321.8144.52136.4810.610.7993.3817.183-2.88136.794
118EE_DG2DT3:DA17DC18_FF-1.4080.2593.218-2.2350.53231.1070.3812.1943.3130.994.1631.19
121EE_DG5DG6:DC14DC15_FF-0.339-0.2593.526-2.4682.87533.876-0.9360.1553.5084.9144.21934.081
122EE_DG6DT7:DA13DC14_FF-0.445-0.6333.1622.151.88127.672-1.7481.4173.073.92-4.48127.817
124EE_DG8DA9:DT11DC12_FF0.5440.0353.23-1.9235.40433.746-0.779-1.2233.1639.2263.28434.216
132EE_DG16DA17:DT3DC4_FF-0.205-0.1653.4791.576-2.73940.7250.0850.4783.472-3.929-2.2640.842
119EE_DT3DC4:DG16DA17_FF0.699-0.1123.3313.0851.74140.397-0.361-0.6553.3662.515-4.45740.546
123EE_DT7DG8:DC12DA13_FF-0.3380.5163.303-3.667.11239.482-0.0790.0653.35910.3985.35140.252
127EE_DT11DC12:DG8DA9_FF-0.563-0.1733.222.8753.80835.276-0.8241.3293.136.248-4.71735.587

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.