A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5VPE  PDB ID: 5VPE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18G_DA9:DT11_H0.023-0.1450.2753.082-13.4965.842
112G_DA13:DT7_H0.062-0.136-0.095-5.109-12.472.39
116G_DA17:DT3_H0.125-0.130.058-7.158-7.549-1.368
13G_DC4:DG16_H0.163-0.2340.296-5.235-15.5161.179
19G_DC10:DG10_H-0.382-0.3120.1031.86-10.642-3.998
111G_DC12:DG8_H0.207-0.227-0.0811.313-8.9050.073
113G_DC14:DG6_H0.3090.0010.129-0.653-7.7634.425
114G_DC15:DG5_H0.234-0.1540.1140.178-6.6560.972
117G_DC18:DG2_H0.31-0.1580.0793.0511.0530.254
11G_DG2:DC18_H-0.065-0.17-0.006-6.78-4.6684.574
14G_DG5:DC15_H-0.152-0.0080.1262.207-9.1323.809
15G_DG6:DC14_H-0.239-0.0520.201-1.374-9.5341.69
17G_DG8:DC12_H-0.195-0.1750.002-0.625-11.478-1.681
115G_DG16:DC4_H-0.284-0.2230.1313.221-17.9871.945
118G_DG19:DC1_H0.051-0.2620.34316.101-18.228-3.698
12G_DT3:DA17_H-0.346-0.2980.175-0.217-10.253-9.37
16G_DT7:DA13_H0.0060.0820.025.76-11.668-1.945
110G_DT11:DA9_H-0.049-0.120.164-1.343-12.8377.12
126E_DA9:DT11_F-0.004-0.0850.2582.577-12.3086.04
130E_DA13:DT7_F0.116-0.131-0.037-10.913-11.2972.552
134E_DA17:DT3_F-0.124-0.0620.033-3.588-11.133-1.57
121E_DC4:DG16_F0.482-0.144-0.078-1.491-14.8693.027
127E_DC10:DG10_F-0.373-0.2210.1224.388-11.403-4.44
129E_DC12:DG8_F0.323-0.28-0.0110.403-10.321-1.343
131E_DC14:DG6_F0.291-0.1480.247-4.027-7.6991.265
132E_DC15:DG5_F0.216-0.2160.0650.147-8.216-0.468
135E_DC18:DG2_F-0.4410.0780.1962.562-7.0942.799
119E_DG2:DC18_F0.149-0.042-0.103-4.029-4.8799.885
122E_DG5:DC15_F0.148-0.0580.1976.438-10.4250.47
123E_DG6:DC14_F-0.40.0540.103-2.776-9.2744.008
125E_DG8:DC12_F-0.11-0.1920.0290.29-11.561.122
133E_DG16:DC4_F-0.228-0.270.237.189-15.511.227
136E_DG19:DC1_F0.128-0.1950.1429.956-18.373-3.288
120E_DT3:DA17_F-0.452-0.1920.0082.532-10.126-6.439
124E_DT7:DA13_F0.111-0.146-0.1012.901-10.999-1.416
128E_DT11:DA9_F-0.02-0.2450.286-2.087-15.5755.563

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.