A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VPE  PDB ID: 5VPE 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
18G_DA9:DT11_H120
112G_DA13:DT7_H120
116G_DA17:DT3_H120
13G_DC4:DG16_H119
19G_DC10:DG10_H119
111G_DC12:DG8_H119
113G_DC14:DG6_H119
114G_DC15:DG5_H119
117G_DC18:DG2_H119
11G_DG2:DC18_H119
14G_DG5:DC15_H119
15G_DG6:DC14_H119
17G_DG8:DC12_H119
115G_DG16:DC4_H119
118G_DG19:DC1_H119
12G_DT3:DA17_H120
16G_DT7:DA13_H120
110G_DT11:DA9_H120
126E_DA9:DT11_F120
130E_DA13:DT7_F120
134E_DA17:DT3_F120
121E_DC4:DG16_F119
127E_DC10:DG10_F119
129E_DC12:DG8_F119
131E_DC14:DG6_F119
132E_DC15:DG5_F119
135E_DC18:DG2_F119
119E_DG2:DC18_F119
122E_DG5:DC15_F119
123E_DG6:DC14_F119
125E_DG8:DC12_F119
133E_DG16:DC4_F119
136E_DG19:DC1_F119
120E_DT3:DA17_F120
124E_DT7:DA13_F120
128E_DT11:DA9_F120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)