A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5VI5  PDB ID: 5VI5 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16OO_DA6DC7:DG43DT44_PP0.488-1.3693.1744.131.62530.976-2.837-0.1473.1373.024-7.68331.285
18OO_DA8DA9:DT41DT42_PP-0.249-0.2583.2282.087-1.30835.531-0.2340.7063.216-2.139-3.41635.614
19OO_DA9DA10:DT40DT41_PP0.253-0.1283.5863.6163.93136.937-0.7710.133.5626.165-5.6737.308
110OO_DA10DA11:DT39DT40_PP0.1330.3363.3170.6953.06136.1110.103-0.1153.3354.926-1.11836.242
111OO_DA11DG12:DC38DT39_PP0.549-0.0842.847-8.8-1.55329.260.102-2.5212.578-2.98816.92930.566
117OO_DA17DA18:DT32DT33_PP0.195-0.5013.2793.899-2.41338.719-0.4560.1853.307-3.623-5.85638.979
118OO_DA18DA19:DT31DT32_PP-0.0220.9533.4541.5342.20536.1631.2030.2653.53.546-2.46836.259
119OO_DA19DT20:DA30DT31_PP0.042-0.3963.392-7.559-0.44132.192-0.619-1.4013.302-0.78213.40133.047
128OO_DA42DC43:DG7DT8_PP0.721-0.9763.536-7.92912.27229.223-3.875-2.6652.64722.62814.61932.601
132OO_DA46DT47:DA3DT4_PP0.5260.9233.3790.299-20.73145.5232.59-0.6032.744-25.303-0.36549.793
12OO_DC2DT3:DA47DG48_PP-0.354-0.413.946-8.8891.66535.828-0.921-0.9043.8992.65414.17236.916
17OO_DC7DA8:DT42DG43_PP0.4070.643.343-0.4123.66537.8670.503-0.6783.3835.6310.63438.04
125OO_DC25DT26:DA24DG25_PP-0.869-0.3412.9185.7453.30728.523-1.292.7912.6416.6-11.46429.268
127OO_DC41DA42:DT8DG9_PP0.682-0.3113.84-0.58122.83727.902-4.269-1.2022.79839.951.01635.917
129OO_DC43DG44:DC6DG7_PP-0.7830.0463.8034.5614.2534.895-2.0431.8823.43922.526-7.20837.875
11OO_DG1DC2:DG48DC49_PP1.179-0.1172.964.963-8.60135.7170.895-1.2343.038-13.699-7.90637.029
15OO_DG5DA6:DT44DC45_PP1.2020.3332.712-11.233-1.33730.8130.766-3.6112.138-2.41620.30332.777
112OO_DG12DT13:DA37DC38_PP-0.981-0.4483.1640.4114.33743.345-1.0041.363.0985.853-0.55543.553
114OO_DG14DT15:DA35DC36_PP0.493-0.6543.3648.2493.52731.724-1.7770.593.2956.296-14.72632.937
122OO_DG22DT23:DA27DC28_PP-0.321-0.2422.9922.3050.4631.567-0.5220.9762.9580.845-4.2331.652
124OO_DG24DC25:DG25DC26_PP0.327-0.8563.2540.3466.18429.76-2.837-0.5573.02211.878-0.66430.383
130OO_DG44DG45:DC5DC6_PP1.0511.0793.017-1.427-4.47232.9642.55-2.0482.804-7.8312.49933.288
131OO_DG45DA46:DT4DC5_PP-1.5540.6163.146-11.275-0.13334.5021.010.8573.466-0.21818.4136.244
134OO_DG48DC49:DG1DC2_PP0.0090.5793.3611.390.8239.9240.7510.1513.3711.2-2.03439.955
13OO_DT3DT4:DA46DA47_PP-0.681-0.7873.0227.7861.79528.553-1.8762.7952.6933.552-15.40829.628
14OO_DT4DG5:DC45DA46_PP-0.2480.4344.3214.47117.87736.063-2.1061.0434.03726.83-6.7140.358
113OO_DT13DG14:DC36DA37_PP0.2660.2373.174-5.067-2.6531.6050.886-1.3553.066-4.8169.20932.105
115OO_DT15DT16:DA34DA35_PP0.288-0.1273.473-1.644-2.80935.0690.233-0.7353.456-4.652.72135.215
116OO_DT16DA17:DT33DA34_PP-0.4840.2053.0355.7952.36235.9560.0261.512.9313.791-9.30136.478
120OO_DT20DT21:DA29DA30_PP0.145-0.3913.322-3.322-0.29338.088-0.559-0.6463.301-0.4475.07838.228
121OO_DT21DG22:DC28DA29_PP0.1860.2123.1210.4893.72535.739-0.166-0.2343.1296.05-0.79535.929
123OO_DT23DG24:DC26DA27_PP0.206-0.2793.151-3.6694.04935.908-0.988-0.8213.0676.5215.9136.307
126OO_DT40DC41:DG9DA10_PP0.0190.3273.848-1.53-2.11536.7940.853-0.2733.82-3.3452.4236.884
133OO_DT47DG48:DC2DA3_PP0.6420.7053.1172.0370.7737.9320.989-0.7373.1591.184-3.13137.993
136PP_DC13DG14:C2G3_QQ1.516-2.1243.5444.87717.90826.034-6.908-1.9321.96234.695-9.44831.879
137PP_DG14DA15:U1C2_QQ0.726-1.0083.333-2.258-5.10942.7-0.853-1.223.385-6.983.08543.047
135PP_DT12DC13:G3A4_QQ-0.249-1.1013.25-4.5836.23727.923-3.533-0.482.94212.629.27328.955

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.