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As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5VI5  PDB ID: 5VI5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16O_DA6:DT44_P0.1440.2870.249.195-20.8164.134
18O_DA8:DT42_P0.2710.1640.54511.832-19.71812.012
19O_DA9:DT41_P0.145-0.1950.3076.135-29.0137.974
110O_DA10:DT40_P0.122-0.096-0.331-10.366-30.7677.682
111O_DA11:DT39_P-0.0290.133-0.679-19.787-20.9869.496
117O_DA17:DT33_P-0.5830.747-0.051-1.966-17.6499.218
118O_DA18:DT32_P0.457-0.258-0.4681.763-27.873.77
119O_DA19:DT31_P-0.432-0.355-1.148-9.781-23.7656.934
129O_DA42:DT8_P-0.0220.425-0.7590.571-7.225-4.58
133O_DA46:DT4_P-1.433-0.38-0.079-7.869-25.694-7.996
12O_DC2:DG48_P-0.680.528-0.71811.43-11.9936.168
17O_DC7:DG43_P0.844-0.008-0.30711.282-16.3018.855
125O_DC25:DG25_P-0.004-0.0330.4079.0246.5983.717
128O_DC41:DG9_P-0.117-0.69-1.47517.536-4.583-10.432
130O_DC43:DG7_P0.322-0.0680.494-2.045-3.4492.496
136O_DC49:DG1_P0.337-0.1020.172-0.485-14.145.13
11O_DG1:DC49_P-0.43-0.351-0.459-8.015-20.798-2.133
15O_DG5:DC45_P0.980.022-1.161-5.116-23.895-13.022
112O_DG12:DC38_P-0.7710.2760.128-2.684-10.3046.031
114O_DG14:DC36_P0.791-0.4620.3856.1013.237-3.548
122O_DG22:DC28_P-0.615-0.0890.214-9.528-4.4025.649
124O_DG24:DC26_P-0.038-0.0550.5935.3772.0170.531
131O_DG44:DC6_P0.075-0.358-0.573-22.017-21.489-4.386
132O_DG45:DC5_P-0.5080.2090.057-13.828-17.93916.974
135O_DG48:DC2_P-0.446-0.090.562-1.49-17.9024.314
13O_DT3:DA47_P0.4770.0960.5735.89-0.684-3.542
14O_DT4:DA46_P-0.669-0.589-0.30112.226-19.588-12.37
113O_DT13:DA37_P2.118-0.646-0.0640.688-15.204-6.039
115O_DT15:DA35_P0.226-0.0770.0175.675-18.7147.402
116O_DT16:DA34_P0.3090.4150.6310.082-12.12312.059
120O_DT20:DA30_P-0.7020.0610.089-12.674-31.6957.233
121O_DT21:DA29_P-0.020.0750.36-13.5-15.7285.31
123O_DT23:DA27_P-0.060.1470.0023.079-3.2585.782
126O_DT26:DA24_P-0.180.107-0.23425.429-5.571-9.022
127O_DT40:DA10_P-0.584-0.27-1.90318.96-22.6522.476
134O_DT47:DA3_P-0.751-0.5840.838-4.061-18.44-2.227
140P_DA15:U1_Q1.4160.4730.22622.204-17.20113.073
138P_DC13:G3_Q0.0860.1450.2915.382-8.127-8.112
139P_DG14:C2_Q-0.472-0.1070.154-2.046-20.4611.953
137P_DT12:A4_Q-0.0830.0290.16-2.897-4.6785.142

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.