A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5V3I  PDB ID: 5V3I 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
115AA_A614A645:A613G773_AA0.842-0.0423.189-0.8914.638-84.021-0.0760.6083.195-3.463-0.665-84.129
110AA_A639G640:C619G620_AA0.206-1.1262.685-1.7565.07360.549-1.31-0.2722.5865.0211.73860.764
116AA_A645G646:C772A613_AA0.4570.574.084-13.9369.00991.6410.182-0.6444.0346.249.65392.801
119AA_A648A649:U769U770_AA-0.683-1.4033.0350.0883.48831.972-3.0971.2472.8686.31-0.15932.157
120AA_A649G650:C768U769_AA1.042-2.6453.626.648.6728.146-6.9-0.6132.86417.039-13.04830.15
126AA_A656C658:G716G763_AA1.8982.1063.561-11.486-14.72782.3081.928-1.6952.985-11.0638.62884.031
130AA_A661C662:G711U712_AA0.815-1.93.046-2.0796.50727.831-5.102-2.0512.4813.2764.24128.641
136AA_A667A668:U678U679_AA0.773-1.142.8842.610.45531.415-2.173-0.9912.920.839-4.8131.523
137AA_A668U669:A677U678_AA1.127-1.3653.189-0.8279.77132.337-3.796-2.0632.64717.061.44433.753
144AA_A685G686:U700U701_AA0.419-2.6883.6963.9545.7516.625-11.9210.9572.65118.844-12.95718.021
147AA_A688G689:C697U698_AA-0.865-2.2343.715-4.58217.63534.308-5.5320.7432.41827.6157.17538.718
151AA_A720C755:G722A652_AA0.524-0.454-3.034-1.6781.504-117.510.280.322-3.026-0.88-0.981-117.523
162AA_A743C742:G733U732_AA-0.5682.195-2.972-1.461-8.984-24.976-6.67-0.93-2.09819.946-3.245-26.558
161AA_A744A743:U732U731_AA0.1541.431-3.3761.361-9.492-37.67-3.2890.069-2.94714.4162.067-38.828
159AA_A746U745:A730U729_AA0.7141.127-3.036-1.263-11.42-36.769-2.9551.221-2.56217.585-1.945-38.463
153AA_A754C753:G724U723_AA-0.2851.004-3.441.915-3.547-36.357-2.106-0.727-3.3125.6633.058-36.572
12AA_C602G603:C783G784_AA0.792-1.8032.421-5.0273.36921.694-5.45-3.2691.8938.73413.03222.512
14AA_C604G606:C780G782_AA1.245-3.575.218-1.36119.06756.55-4.986-1.3553.9119.5191.39359.44
19AA_C610G611:A774G775_AA0.825-0.0364.068-3.076-0.99357.8970.028-1.0544.023-1.0253.17557.98
112AA_C641G642:U617G618_AA1.426-2.5123.678-0.7668.21523.238-8.376-3.5742.60219.6181.8324.64
122AA_C651G653:C766G767_AA-0.143-1.8773.3724.443-1.05634.765-2.9510.9293.382-1.758-7.39735.055
127AA_C658U659:A715G716_AA0.467-1.1632.6822.1843.2230.699-2.683-0.5342.5766.052-4.10430.939
129AA_C660A661:U712G714_AA0.372-2.0093.161.0926.12336.026-3.979-0.4562.8039.81-1.74936.541
131AA_C662C663:G710G711_AA-0.518-1.9813.2340.8366.86827.777-5.4331.2212.66114.031-1.70928.609
132AA_C663U664:U709G710_AA0.487-1.5263.201-14.4484.88338.005-2.685-2.1742.6457.15721.17540.846
135AA_C666A667:U679G680_AA-1.188-1.7983.456-0.63113.46631.436-5.0981.9282.5223.5441.10334.137
146AA_C687A688:U698G699_AA0.545-2.0143.4278.8916.6330.423-4.8010.6092.97212.139-16.27832.337
149AA_C718U719:A756G757_AA0.723-0.4543.5692.9123.06234.455-1.275-0.7243.5645.145-4.89434.705
164AA_C741G740:C735G734_AA0.1162.145-3.369-6.2190.096-34.989-3.5021.125-3.306-0.157-10.244-35.52
163AA_C742C741:G734G733_AA0.2091.805-3.5211.532-10.92-32.658-4.740.116-2.79818.7642.632-34.421
158AA_C747A746:U729G728_AA-0.3961.694-3.0642.41-2.094-28.469-3.857-1.297-2.8914.2424.881-28.644
157AA_C748C747:G728G727_AA0.3772.3-3.24-0.751-8.709-27.521-6.3320.904-2.40317.747-1.53-28.85
154AA_C753G752:A725G724_AA0.0471.976-3.4999.368-4.957-37.102-3.629-1.13-3.1397.60114.367-38.535
152AA_C755A754:U723G722_AA0.5871.176-3.2110.725-2.879-34.682-2.3910.875-3.1184.8191.213-34.805
11AA_G601C602:G784C785_AA-0.161-1.263.356-3.1757.04843.437-2.341-0.0843.1289.4344.2544.087
13AA_G603C604:G782C783_AA-0.497-1.7183.0580.751-6.68530.579-1.9361.0623.336-12.487-1.40331.293
15AA_G606U607:A779C780_AA0.135-1.7853.52410.0795.80846.52-2.6850.6763.2527.222-12.53247.874
17AA_G608U609:A776U777_AA0.08-1.7693.10.9435.31833.381-3.8220.02.7949.184-1.62933.802
139AA_G623G624:C636C637_AA-0.734-2.3893.8372.7660.26136.455-3.851.6133.7560.417-4.41436.557
140AA_G624G625:C635C636_AA0.891-2.0573.4955.1748.48134.845-4.525-0.6943.02513.818-8.4336.192
141AA_G625C626:C634C635_AA-0.537-1.8353.6347.0212.72543.182-3.5281.3312.89416.734-9.23245.451
111AA_G640C641:G618C619_AA0.346-2.113.3153.7198.39226.981-6.070.0852.57917.361-7.69428.472
113AA_G642G643:C616U617_AA-0.059-2.0563.340.4769.9138.434-4.1260.1392.74714.755-0.70839.647
114AA_G643A614:G773C616_AA-0.726-5.0742.614-9.13812.176106.273-3.2750.3612.2437.5845.692107.028
117AA_G646U647:G771C772_AA0.033-1.4533.293-5.766-2.65539.448-1.816-0.7263.343-3.9038.47539.936
121AA_G650C651:G767C768_AA-0.89-2.113.257-1.1992.27235.296-3.7991.293.1473.7411.97535.387
123AA_G653G654:C765C766_AA-0.502-1.5823.3611.4282.76730.311-3.5651.2413.1815.273-2.72230.466
124AA_G654G655:C764C765_AA-0.169-1.6833.574.7058.9934.941-3.9870.9463.01214.596-7.63936.341
125AA_G655A656:G763C764_AA-1.177-0.3442.8023.1083.48229.825-1.2512.7872.6136.714-5.99230.179
142AA_G683U684:A702U703_AA-0.116-1.6053.1694.016-0.87838.55-2.3140.6533.176-1.325-6.06138.76
145AA_G686C687:G699U700_AA-0.821-1.4773.231-6.2926.79640.306-2.8020.5073.0429.7088.98741.313
148AA_G717C718:G757C758_AA-1.567-1.593.079-2.743-0.73935.117-2.5212.1963.22-1.2234.53835.228
165AA_G740A739:G736C735_AA-1.9660.738-2.9872.906-1.989-48.194-1.04-2.604-2.8412.4323.554-48.315
156AA_G749C748:G727C726_AA0.0311.889-3.574-3.22-17.685-30.302-5.6350.507-2.16430.677-5.585-35.125
155AA_G752G749:C726A725_AA1.0620.71-2.713-4.357-1.489-33.749-1.4022.372-2.5272.55-7.461-34.053
16AA_U607G608:U777A779_AA1.304-0.8763.488-18.26620.58644.576-2.316-2.6562.25424.57321.80352.016
18AA_U609C610:G775A776_AA-0.202-0.9873.3521.766-3.03128.948-1.2740.8013.417-6.036-3.51629.155
118AA_U647A648:U770G771_AA0.198-1.7162.8633.2466.68527.146-4.8130.2142.38713.914-6.75728.126
128AA_U659C660:G714A715_AA0.417-1.2553.2143.571-4.01740.337-1.358-0.2023.342-5.793-5.1540.679
133AA_U664U681:U708U709_AA2.0343.7812.01142.60745.963-79.719-2.01.256-1.027-24.60276.332-156.953
138AA_U669G670:C676A677_AA-1.296-1.7262.991.69615.81529.505-5.0362.471.78428.587-3.06533.435
134AA_U681C666:G680U708_AA-4.416-1.85-2.224139.303-80.465-165.1990.86-2.321-1.83840.27269.719-177.548
143AA_U684A685:U701A702_AA-0.288-1.4293.217-0.92710.92629.389-4.5230.3742.54320.6521.75231.326
150AA_U719A720:A652A756_AA-2.586-1.74-0.931-91.871143.614141.057-0.7381.378-0.90272.03546.081176.831
160AA_U745A744:U731A730_AA-0.2081.849-3.2081.572-11.217-30.843-4.978-0.608-2.39420.2552.838-32.809

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.