A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
Search for released structures

NDB ID: 5V3I  PDB ID: 5V3I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
116A_A614:G773_A0.1510.912-0.2012.227-9.889-18.304
111A_A639:G620_A-7.077-4.7430.243-28.49517.397-12.162
117A_A645:A613_A-6.2-0.63-0.24429.572-9.84260.503
120A_A648:U770_A0.3980.0190.245-1.22-6.3346.216
121A_A649:U769_A0.2840.210.4114.194-12.593-2.496
127A_A656:G763_A0.7331.094-0.34610.383-14.608-25.633
131A_A661:U712_A0.8990.126-0.0768.827-17.256-10.002
137A_A667:U679_A-0.1230.029-0.038-9.96-11.734-6.218
138A_A668:U678_A-0.0210.0780.1618.939-22.2446.616
147A_A685:U701_A0.144-0.1110.0032.0938.097.345
150A_A688:U698_A0.71-0.353-0.814-8.521-21.689-6.803
155A_A720:A652_A-6.488-0.6860.13115.882-12.84354.836
170A_A739:G736_A-7.349-4.8660.202-8.12-1.114-6.714
166A_A743:U732_A-0.397-0.2050.4195.66-12.23-5.263
165A_A744:U731_A0.3830.0150.687-3.011-13.281-4.004
163A_A746:U729_A0.640.1670.12-5.315-13.667-0.896
157A_A754:U723_A0.4380.0830.21-4.693-18.1558.062
12A_C602:G784_A0.931-0.0530.244-7.608-18.021-3.14
14A_C604:G782_A-0.693-0.3371.0718.78-26.011-1.06
19A_C610:G775_A-0.480.666-1.3549.21-16.7511.776
144A_C626:C634_A2.926-0.895-0.497-16.429-3.629-23.228
113A_C641:G618_A-0.0610.019-0.679.879-0.727-2.922
123A_C651:G767_A0.217-0.506-0.007-13.9161.51-4.422
128A_C658:G716_A0.350.2310.929-13.912-5.9694.818
130A_C660:G714_A1.267-0.2810.3659.308-21.143-0.978
132A_C662:G711_A-0.429-0.108-0.17917.111-14.8282.899
133A_C663:G710_A-0.2830.368-1.04726.913-13.3492.51
136A_C666:G680_A0.4110.0120.3027.847-23.0644.77
149A_C687:G699_A-0.17-0.4650.736-7.28-16.588-8.035
153A_C718:G757_A-0.288-0.2480.426-8.709-17.227-8.007
168A_C741:G734_A0.3610.021-0.39112.918-17.7730.128
167A_C742:G733_A0.099-0.3080.1582.219-5.142-6.618
162A_C747:G728_A0.410.0060.3113.688-16.362.852
161A_C748:G727_A-0.334-0.0880.124-1.16-18.247-2.521
158A_C753:G724_A-0.0310.317-0.169-0.074-9.488-1.604
156A_C755:G722_A0.076-0.3630.409-3.942-24.844-1.74
11A_G601:C785_A-0.616-0.2040.083-10.22-19.288-7.475
13A_G603:C783_A-1.0210.2011.1235.885-5.219.231
15A_G606:C780_A-1.522-0.5990.98217.519-16.563-0.955
17A_G608:U777_A-1.513-0.760.528-6.314-23.851-14.45
110A_G611:A774_A6.241-2.13-1.839.3370.28218.121
141A_G623:C637_A-0.415-0.2080.4476.097-10.393-7.22
142A_G624:C636_A-0.278-0.459-0.205-7.193-11.485-12.146
143A_G625:C635_A0.055-0.374-0.434-11.949-9.048-2.214
112A_G640:C619_A-0.041-0.255-0.1963.9389.705-4.38
114A_G642:U617_A-1.998-0.395-0.244-4.868-5.6843.887
115A_G643:C616_A-0.2740.319-0.317-12.713-10.2724.391
118A_G646:C772_A0.211-0.360.346-8.053-23.319-5.008
122A_G650:C768_A0.171-0.33-0.173-13.383-15.619-1.521
124A_G653:C766_A0.5440.198-0.206-10.796-6.2918.154
125A_G654:C765_A0.4510.046-0.13-11.447-14.073-4.783
126A_G655:C764_A0.288-0.025-0.269-19.955-23.25-2.448
140A_G670:C676_A0.259-0.1870.14112.6221.447-10.563
145A_G683:U703_A-2.681-0.363-0.31-8.802-5.43111.615
148A_G686:U700_A-2.387-1.1330.126-12.011-23.18-5.604
151A_G689:C697_A0.1510.351-0.732-33.341-17.266-15.229
152A_G717:C758_A-0.6370.0030.348-11.261-11.2277.817
169A_G740:C735_A-0.5790.150.35610.3050.1795.713
160A_G749:C726_A-0.507-0.169-0.267-13.419-15.355-8.868
159A_G752:A725_A-0.0771.876-0.8416.267-14.073-12.545
16A_U607:A779_A-0.4170.002-0.537-0.06-25.856-8.099
18A_U609:A776_A-0.1550.8970.309-0.197-32.77312.625
119A_U647:G771_A2.125-0.5160.435-2.953-12.8140.325
129A_U659:A715_A-0.0170.2230.6393.97-19.5598.744
134A_U664:U709_A1.497-1.7520.3226.829-3.2626.527
139A_U669:A677_A0.0860.0980.5610.255-14.8288.62
135A_U681:U708_A0.9872.232-1.37-0.068-9.808-73.574
146A_U684:A702_A0.5620.152-0.3913.262-7.31312.685
154A_U719:A756_A0.146-0.2320.784-16.169-11.0842.409
164A_U745:A730_A-0.184-0.0780.996-8.607-21.9336.832

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.