A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5V3G  PDB ID: 5V3G 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12EE_DA3DC4:DG-1DT0_FF0.683-0.7093.29-1.878-1.83332.546-0.942-1.5423.28-3.2653.34432.649
17EE_DA8DG9:DC-6DT-5_FF1.013-1.1753.691-1.9480.96827.355-2.742-2.6693.5692.0424.1127.44
111EE_DA12DG13:DC-10DT-9_FF0.581-0.7863.338-1.03-0.89829.59-1.343-1.3583.338-1.7582.01529.62
13EE_DC4DC5:DG-2DG-1_FF0.1370.0683.3241.90112.41729.668-2.1540.1023.10622.996-3.52132.163
14EE_DC5DC6:DG-3DG-2_FF0.34-1.2373.6650.3472.61738.095-2.256-0.4713.5794.004-0.5338.183
15EE_DC6DC7:DG-4DG-3_FF1.1690.4372.957.1796.29233.309-0.188-0.9123.15510.706-12.21634.613
16EE_DC7DA8:DT-5DG-4_FF-0.9160.6173.281-3.124-1.49633.7081.3031.0643.321-2.5725.3733.88
113EE_DC14DG15:DC-12DG-11_FF1.049-1.5074.092.18-2.16527.688-2.468-1.5124.262-4.507-4.53727.855
118EE_DC19DC20:DG-17DG-16_FF-1.071-0.0463.405-2.899-1.86635.2950.2131.313.477-3.0684.76735.458
119EE_DC20DC21:DG-18DG-17_FF0.9880.0643.4685.2222.4738.349-0.23-0.7983.5653.734-7.89438.766
11EE_DG2DA3:DT0DC1_FF-1.0851.6893.01-8.463-0.02441.9892.3180.6823.16-0.03311.66842.795
18EE_DG9DT10:DA-7DC-6_FF-0.916-0.7643.3434.3653.47235.052-1.762.143.1235.72-7.19235.479
110EE_DG11DA12:DT-9DC-8_FF-1.2090.9633.176-4.6123.20437.9121.0631.2613.3624.8997.05138.311
112EE_DG13DC14:DG-11DC-10_FF0.33-0.5853.2071.2661.230.111-1.363-0.3823.1932.308-2.43430.161
114EE_DG15DT16:DA-13DC-12_FF-0.446-1.1753.19-0.2893.84534.425-2.5390.7063.0496.4710.48734.634
117EE_DG18DC19:DG-16DC-15_FF0.807-0.4623.095-0.6944.55527.743-1.947-1.8132.9629.4171.43428.115
19EE_DT10DG11:DC-8DA-7_FF0.7641.2643.451-0.95310.86732.0310.211-1.4873.65119.0171.66833.792
115EE_DT16DT17:DA-14DA-13_FF-0.233-0.8053.395-0.512-4.74637.036-0.5970.2923.47-7.4330.80237.332
116EE_DT17DG18:DC-15DA-14_FF-0.305-0.7273.360.3484.12233.767-1.910.5773.2487.063-0.59734.012
121BB_DA3DC4:DG19DT20_CC0.734-0.6563.368-0.6520.332.778-1.215-1.4153.3470.5311.15432.786
126BB_DA8DG9:DC14DT15_CC0.703-0.9763.606-3.413-0.3632.912-1.648-1.8643.527-0.6326.00433.086
130BB_DA12DG13:DC10DT11_CC0.94-0.6113.5984.4890.73728.663-1.402-0.7693.6821.477-8.99629.014
122BB_DC4DC5:DG18DG19_CC0.128-0.0593.1010.23112.17528.636-2.324-0.1972.84223.327-0.44231.068
123BB_DC5DC6:DG17DG18_CC0.273-0.8433.821.763-0.93439.508-1.117-0.1613.847-1.381-2.60539.557
124BB_DC6DC7:DG16DG17_CC1.0130.3733.0235.8396.25230.945-0.41-0.8213.1711.445-10.6932.078
125BB_DC7DA8:DT15DG16_CC-0.8090.7163.278-1.9211.92631.5020.9521.1233.3573.543.53131.616
132BB_DC14DG15:DC8DG9_CC0.965-1.4914.0932.73-2.93230.465-2.074-1.1334.283-5.549-5.16830.721
137BB_DC19DC20:DG3DG4_CC-0.529-0.3343.2951.081-0.49236.259-0.4671.0023.282-0.791-1.73736.278
138BB_DC20DC21:DG2DG3_CC1.070.1383.6114.8473.31539.741-0.223-0.9383.714.845-7.08340.155
120BB_DG2DA3:DT20DC21_CC-1.0231.2183.404-2.8061.29941.7131.5631.1223.4971.8213.93441.823
127BB_DG9DT10:DA13DC14_CC-0.727-0.7363.3223.9513.82733.379-1.8781.8823.1176.606-6.82133.816
129BB_DG11DA12:DT11DC12_CC-1.1940.783.274-4.0441.15740.2560.9951.2643.3941.6765.85640.466
131BB_DG13DC14:DG9DC10_CC0.312-0.4083.168-2.3491.37827.661-1.168-1.1923.1072.8734.89827.792
133BB_DG15DT16:DA7DC8_CC0.039-1.2023.287-1.021.80136.379-2.172-0.2033.2232.8831.63236.436
136BB_DG18DC19:DG4DC5_CC0.606-0.5513.225-0.5561.71627.552-1.563-1.4023.1733.5971.16627.61
128BB_DT10DG11:DC12DA13_CC0.5211.0993.339-0.3598.83431.0270.302-1.0063.50516.1080.65432.232
134BB_DT16DT17:DA6DA7_CC-0.523-0.9083.4461.965-3.80630.846-0.9181.3753.491-7.113-3.67231.135
135BB_DT17DG18:DC5DA6_CC0.134-0.4363.4211.6575.98935.58-1.5820.0273.3099.71-2.68736.101

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.