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As of 15-Nov-2017 number of released structures: 9208
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NDB ID: 5V3G  PDB ID: 5V3G 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA3:DT0_F0.255-0.101-0.0713.728-11.3950.352
17E_DA8:DT-5_F0.551-0.1380.16813.369-10.151-0.076
111E_DA12:DT-9_F0.326-0.1330.0581.206-8.183-0.631
13E_DC4:DG-1_F0.042-0.1590.1021.492-12.782-0.146
14E_DC5:DG-2_F0.246-0.0790.0919.866-15.89-2.244
15E_DC6:DG-3_F0.056-0.1610.325-13.298-2.77-2.699
16E_DC7:DG-4_F0.28-0.135-0.276.7024.0780.358
113E_DC14:DG-11_F0.668-0.28-0.01211.497-4.917-0.37
118E_DC19:DG-16_F0.3750.054-0.1667.798-1.7795.051
119E_DC20:DG-17_F0.235-0.47-0.03210.197-13.033-0.473
120E_DC21:DG-18_F0.227-0.273-0.0833.114-6.9031.719
11E_DG2:DC1_F-0.176-0.132-0.37-5.767-7.9262.278
18E_DG9:DC-6_F-0.503-0.210.1210.666-16.8080.61
110E_DG11:DC-8_F-0.041-0.148-0.182-4.613-4.0785.265
112E_DG13:DC-10_F-0.078-0.240.1452.878-3.128-2.672
114E_DG15:DC-12_F-0.466-0.077-0.288-10.475-6.0053.964
117E_DG18:DC-15_F0.379-0.259-0.161-1.077-4.969-6.729
19E_DT10:DA-7_F-0.214-0.226-0.39-2.135-14.2080.017
115E_DT16:DA-13_F-0.447-0.245-0.081-2.328-10.406-2.451
116E_DT17:DA-14_F-0.052-0.299-0.11-2.98-2.2940.679
122B_DA3:DT20_C0.383-0.169-0.043.198-11.372-0.825
127B_DA8:DT15_C-0.022-0.4540.0749.812-6.254-3.383
131B_DA12:DT11_C0.593-0.3070.1945.16-8.316-5.492
123B_DC4:DG19_C0.29-0.1930.074-2.479-10.6281.799
124B_DC5:DG18_C0.338-0.0770.15511.03-16.5111.437
125B_DC6:DG17_C0.097-0.3290.157-12.302-0.085-1.431
126B_DC7:DG16_C-0.068-0.252-0.25-0.4321.6910.081
133B_DC14:DG9_C0.223-0.197-0.129.208-0.1534.17
138B_DC19:DG4_C0.207-0.18-0.0461.792-9.4946.809
139B_DC20:DG3_C0.678-0.431-0.35610.856-9.316-0.717
140B_DC21:DG2_C0.921-0.044-0.165-1.06-3.32511.959
121B_DG2:DC21_C-0.455-0.1970.0543.218-3.756-0.188
128B_DG9:DC14_C-0.261-0.0740.181-0.326-9.7541.601
130B_DG11:DC12_C-0.075-0.2210.0571.241-0.6060.622
132B_DG13:DC10_C-0.091-0.134-0.189-1.654-7.9210.221
134B_DG15:DC8_C-0.343-0.039-0.468-11.41-6.3422.727
137B_DG18:DC5_C0.377-0.248-0.184-2.372-6.958-3.561
129B_DT10:DA13_C-0.042-0.052-0.228-0.952-8.708-2.068
135B_DT16:DA7_C0.026-0.194-0.011-2.555-7.120.541
136B_DT17:DA6_C-0.385-0.187-0.097-4.045-9.0941.073

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.