A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5V3G  PDB ID: 5V3G 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
12E_DA3:DT0_F120
17E_DA8:DT-5_F120
111E_DA12:DT-9_F120
13E_DC4:DG-1_F119
14E_DC5:DG-2_F119
15E_DC6:DG-3_F119
16E_DC7:DG-4_F119
113E_DC14:DG-11_F119
118E_DC19:DG-16_F119
119E_DC20:DG-17_F119
120E_DC21:DG-18_F119
11E_DG2:DC1_F119
18E_DG9:DC-6_F119
110E_DG11:DC-8_F119
112E_DG13:DC-10_F119
114E_DG15:DC-12_F119
117E_DG18:DC-15_F119
19E_DT10:DA-7_F120
115E_DT16:DA-13_F120
116E_DT17:DA-14_F120
122B_DA3:DT20_C120
127B_DA8:DT15_C120
131B_DA12:DT11_C120
123B_DC4:DG19_C119
124B_DC5:DG18_C119
125B_DC6:DG17_C119
126B_DC7:DG16_C119
133B_DC14:DG9_C119
138B_DC19:DG4_C119
139B_DC20:DG3_C119
140B_DC21:DG2_C119
121B_DG2:DC21_C119
128B_DG9:DC14_C119
130B_DG11:DC12_C119
132B_DG13:DC10_C119
134B_DG15:DC8_C119
137B_DG18:DC5_C119
129B_DT10:DA13_C120
135B_DT16:DA7_C120
136B_DT17:DA6_C120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)